.read.metaboanalyst.lib	dot-read.metaboanalyst.lib
.readDataTable	dot-readDataTable
AddErrMsg	AddErrMsg
analyze.lipids	analyze.lipids
ANOVA.Anal	ANOVA.Anal
ANOVA2.Anal	ANOVA2.Anal
aof	aof
aov.between	aov.between
aov.repeated	aov.repeated
aov.within	aov.within
ASCAfun.res	ASCAfun.res
ASCAfun1	ASCAfun1
ASCAfun2	ASCAfun2
calculateConcISO	calculateConcISO
CalculateFeatureRanking	CalculateFeatureRanking
CalculateGlobalTestScore	CalculateGlobalTestScore
CalculateHyperScore	CalculateHyperScore
CalculateImpVarCutoff	CalculateImpVarCutoff
CalculateOraScore	CalculateOraScore
CalculatePairwiseDiff	CalculatePairwiseDiff
CalculateQeaScore	CalculateQeaScore
CalculateSSP	CalculateSSP
CheckMetaDataConsistency	CheckMetaDataConsistency
CleanData	CleanData
CleanDataMatrix	CleanDataMatrix
CleanNumber	CleanNumber
ClearNegatives	ClearNegatives
ClearStrings	ClearStrings
ClearUserDir	ClearUserDir
ComputeAverageCurve	ComputeAverageCurve
computeConc	computeConc
ComputeHighLow	ComputeHighLow
Convert2Mummichog	Convert2Mummichog
CreateAnalNullMsg	CreateAnalNullMsg
CreateANOVAdoc	CreateANOVAdoc
CreateAOV2doc	CreateAOV2doc
CreateASCAdoc	CreateASCAdoc
CreateBiomarkerInputDoc	CreateBiomarkerInputDoc
CreateBiomarkerIntr	CreateBiomarkerIntr
CreateBiomarkerOverview	CreateBiomarkerOverview
CreateBiomarkerRatioOverview	CreateBiomarkerRatioOverview
CreateBiomarkerRnwReport	CreateBiomarkerRnwReport
CreateCorrDoc	CreateCorrDoc
createCVset	createCVset
CreateEBAMdoc	CreateEBAMdoc
CreateEnrichAnalDoc	CreateEnrichAnalDoc
CreateEnrichInputDoc	CreateEnrichInputDoc
CreateEnrichIntr	CreateEnrichIntr
CreateEnrichORAdoc	CreateEnrichORAdoc
CreateEnrichOverview	CreateEnrichOverview
CreateEnrichProcessDoc	CreateEnrichProcessDoc
CreateEnrichQEAdoc	CreateEnrichQEAdoc
CreateEnrichRnwReport	CreateEnrichRnwReport
CreateEnrichSSPdoc	CreateEnrichSSPdoc
CreateFooter	CreateFooter
CreateGraph	CreateGraph
CreateHCdoc	CreateHCdoc
CreateHeatmap2doc	CreateHeatmap2doc
CreateIntegPathwayAnalysisRnwReport	CreateIntegPathwayAnalysisRnwReport
CreateIntegratedPathwayAnalInputDoc	CreateIntegratedPathwayAnalInputDoc
CreateIntegratedPathwayAnalIntr	CreateIntegratedPathwayAnalIntr
CreateIntegratedPathwayDoc	CreateIntegratedPathwayDoc
CreateIntegratedPathwayGeneMapTable	CreateIntegratedPathwayGeneMapTable
CreateIntegratedPathwayNameMapTable	CreateIntegratedPathwayNameMapTable
CreateIntegratedPathwayResultsTable	CreateIntegratedPathwayResultsTable
CreateiPCAdoc	CreateiPCAdoc
CreateKMdoc	CreateKMdoc
CreateLadder	CreateLadder
CreateMappingResultTable	CreateMappingResultTable
CreateMBdoc	CreateMBdoc
CreateMetaAnalysisDEdoc	CreateMetaAnalysisDEdoc
CreateMetaAnalysisInputDoc	CreateMetaAnalysisInputDoc
CreateMetaAnalysisIntr	CreateMetaAnalysisIntr
CreateMetaAnalysisNORMdoc	CreateMetaAnalysisNORMdoc
CreateMetaAnalysisOutput	CreateMetaAnalysisOutput
CreateMetaAnalysisOverview	CreateMetaAnalysisOverview
CreateMetaAnalysisRnwReport	CreateMetaAnalysisRnwReport
CreateMetaTable	CreateMetaTable
CreateModelBiomarkersDoc	CreateModelBiomarkersDoc
CreateMultiBiomarkersDoc	CreateMultiBiomarkersDoc
CreateMummichogAnalTable	CreateMummichogAnalTable
CreateMummichogAnalysisDoc	CreateMummichogAnalysisDoc
CreateMummichogInputDoc	CreateMummichogInputDoc
CreateMummichogIntro	CreateMummichogIntro
CreateMummichogOverview	CreateMummichogOverview
CreateMummichogRnwReport	CreateMummichogRnwReport
CreateNetworkExplorerDoc	CreateNetworkExplorerDoc
CreateNetworkExplorerInputDoc	CreateNetworkExplorerInputDoc
CreateNetworkExplorerIntr	CreateNetworkExplorerIntr
CreateNetworkExplorerOverview	CreateNetworkExplorerOverview
CreateNetworkExplorerRnwReport	CreateNetworkExplorerRnwReport
CreateNetworkGeneMapTable	CreateNetworkGeneMapTable
CreateNetworkNameMapTable	CreateNetworkNameMapTable
CreateNORMdoc	CreateNORMdoc
CreateOPLSDAdoc	CreateOPLSDAdoc
CreatePathAnalDoc	CreatePathAnalDoc
CreatePathInputDoc	CreatePathInputDoc
CreatePathIntr	CreatePathIntr
CreatePathProcessDoc	CreatePathProcessDoc
CreatePathResultDoc	CreatePathResultDoc
CreatePathRnwReport	CreatePathRnwReport
CreatePCAdoc	CreatePCAdoc
CreatePLSdoc	CreatePLSdoc
CreatePowerAnalDoc	CreatePowerAnalDoc
CreatePowerInputDoc	CreatePowerInputDoc
CreatePowerIntr	CreatePowerIntr
CreatePowerOverview	CreatePowerOverview
CreatePowerParametersDoc	CreatePowerParametersDoc
CreatePowerRnwReport	CreatePowerRnwReport
CreateRatioTable	CreateRatioTable
CreateRFdoc	CreateRFdoc
CreateRHistAppendix	CreateRHistAppendix
CreateROCLabelsTable	CreateROCLabelsTable
CreateSAMdoc	CreateSAMdoc
CreateSemiTransColors	CreateSemiTransColors
CreateSOMdoc	CreateSOMdoc
CreateSPLSDAdoc	CreateSPLSDAdoc
CreateStatIntr	CreateStatIntr
CreateStatIOdoc	CreateStatIOdoc
CreateStatRnwReport	CreateStatRnwReport
CreateSummaryTable	CreateSummaryTable
CreateSVMdoc	CreateSVMdoc
CreateTimeSeriesAnalNullMsg	CreateTimeSeriesAnalNullMsg
CreateTimeSeriesIOdoc	CreateTimeSeriesIOdoc
CreateTimeSeriesRnwReport	CreateTimeSeriesRnwReport
CreateUnivarBiomarkersDoc	CreateUnivarBiomarkersDoc
CreateUNIVdoc	CreateUNIVdoc
CreateUnivROCTable	CreateUnivROCTable
CreateVennMetaTable	CreateVennMetaTable
CrossReferencing	CrossReferencing
CVTest.LRmodel	CVTest.LRmodel
descendMin	descendMin
doCompoundMapping	doCompoundMapping
doEmblProtein2EntrezMapping	doEmblProtein2EntrezMapping
doGeneIDMapping	doGeneIDMapping
doKEGG2NameMapping	doKEGG2NameMapping
doKOFiltering	doKOFiltering
EBAM.A0.Init	EBAM.A0.Init
EBAM.Cmpd.Init	EBAM.Cmpd.Init
FC.Anal.paired	FC.Anal.paired
FC.Anal.unpaired	FC.Anal.unpaired
FeatureCorrelation	FeatureCorrelation
fgsea2	fgsea2
FilterVariable	FilterVariable
findEqualGreaterM	findEqualGreaterM
FisherLSD	FisherLSD
FormatPeakList	FormatPeakList
genLogisticRegMdl	genLogisticRegMdl
Get.asca.tss	Get.asca.tss
Get.bwss	Get.bwss
Get.ConcRef	Get.ConcRef
Get.Leverage	Get.Leverage
Get.pAUC	Get.pAUC
Get.pred	Get.pred
Get.rpart.summary	Get.rpart.summary
Get.VIP	Get.VIP
GetAbundanceLabel	GetAbundanceLabel
GetAccuracyInfo	GetAccuracyInfo
GetAllDataNames	GetAllDataNames
GetAllKMClusterMembers	GetAllKMClusterMembers
GetAllSOMClusterMembers	GetAllSOMClusterMembers
GetCandidateList	GetCandidateList
GetCircleInfo	GetCircleInfo
GetCIs	GetCIs
GetCMD	GetCMD
GetConvertFullPath	GetConvertFullPath
getDataFromTextArea	getDataFromTextArea
GetExtendRange	GetExtendRange
GetFC	GetFC
GetFeatureNumbers	GetFeatureNumbers
GetFinalNameMap	GetFinalNameMap
GetFisherPvalue	GetFisherPvalue
GetHTMLMetSet	GetHTMLMetSet
GetHTMLPathSet	GetHTMLPathSet
GetImpFeatureMat	GetImpFeatureMat
GetKEGGNodeInfo	GetKEGGNodeInfo
GetKMClusterMembers	GetKMClusterMembers
GetLassoFreqs	GetLassoFreqs
GetLimmaResTable	GetLimmaResTable
GetMapTable	GetMapTable
GetMaxPCAComp	GetMaxPCAComp
GetMeanROC	GetMeanROC
GetMetaResultMatrix	GetMetaResultMatrix
GetMetaSigHitsTable	GetMetaSigHitsTable
GetMetSetName	GetMetSetName
GetMsetLibCheckMsg	GetMsetLibCheckMsg
GetMsetLibSearchResult	GetMsetLibSearchResult
GetMsetNames	GetMsetNames
GetNetworkGeneMappingResultTable	GetNetworkGeneMappingResultTable
GetNewSampleNames	GetNewSampleNames
GetORA.pathNames	GetORA.pathNames
GetORA.smpdbIDs	GetORA.smpdbIDs
GetORATable	GetORATable
GetQEA.keggIDs	GetQEA.keggIDs
GetQEA.pathNames	GetQEA.pathNames
GetQEATable	GetQEATable
GetRCommandHistory	GetRCommandHistory
GetRFConf.Table	GetRFConf.Table
GetRFConfMat	GetRFConfMat
GetRFOOB	GetRFOOB
GetRFSigMat	GetRFSigMat
GetROC.coords	GetROC.coords
GetROCLassoFreq	GetROCLassoFreq
GetROCTtestP	GetROCTtestP
GetSampleSizeLadder	GetSampleSizeLadder
GetSelectedDataNames	GetSelectedDataNames
GetSelectedDataNumber	GetSelectedDataNumber
GetSigTable	GetSigTable
GetSigTable.Anova	GetSigTable.Anova
GetSigTable.Aov2	GetSigTable.Aov2
GetSigTable.ASCA	GetSigTable.ASCA
GetSigTable.Corr	GetSigTable.Corr
GetSigTable.EBAM	GetSigTable.EBAM
GetSigTable.FC	GetSigTable.FC
GetSigTable.MB	GetSigTable.MB
GetSigTable.RF	GetSigTable.RF
GetSigTable.SAM	GetSigTable.SAM
GetSigTable.SVM	GetSigTable.SVM
GetSigTable.TT	GetSigTable.TT
GetSigTable.Volcano	GetSigTable.Volcano
GetSOMClusterMembers	GetSOMClusterMembers
GetSSPTable	GetSSPTable
GetSuggestedSAMDelta	GetSuggestedSAMDelta
GetSVMSigMat	GetSVMSigMat
GetTopInx	GetTopInx
GetTrainTestSplitMat	GetTrainTestSplitMat
GetTtestRes	GetTtestRes
GetTTSigMat	GetTTSigMat
GetUnivReport	GetUnivReport
GetVariableLabel	GetVariableLabel
GetVennGeneNames	GetVennGeneNames
GetXYCluster	GetXYCluster
GroupPeakList	GroupPeakList
heckbert	heckbert
HMDBID2KEGGID	HMDBID2KEGGID
HMDBID2Name	HMDBID2Name
ImportRawMSData	ImportRawMSData
ImputeVar	ImputeVar
InitDataObjects	InitDataObjects
InitPowerAnal	InitPowerAnal
InitStatAnalMode	InitStatAnalMode
InitTimeSeriesAnal	InitTimeSeriesAnal
iPCA.Anal	iPCA.Anal
isEmptyMatrix	isEmptyMatrix
IsSmallSmplSize	IsSmallSmplSize
IsSpectraProcessingOK	IsSpectraProcessingOK
KEGGID2HMDBID	KEGGID2HMDBID
KEGGID2Name	KEGGID2Name
KEGGPATHID2SMPDBIDs	KEGGPATHID2SMPDBIDs
Kmeans.Anal	Kmeans.Anal
kwtest	kwtest
LoadKEGGKO_lib	LoadKEGGKO_lib
LoadKEGGLib	LoadKEGGLib
LoadMsetLib	LoadMsetLib
LoadSmpLib	LoadSmpLib
LogNorm	LogNorm
LSD.test	LSD.test
make_cpdlist	make_cpdlist
map	map
MapCmpd2KEGGNodes	MapCmpd2KEGGNodes
MapKO2KEGGEdges	MapKO2KEGGEdges
Match.Pattern	Match.Pattern
MergeDatasets	MergeDatasets
MergeDuplicates	MergeDuplicates
MetaboliteMappingExact	MetaboliteMappingExact
MSspec.fillPeaks	MSspec.fillPeaks
MSspec.rtCorrection	MSspec.rtCorrection
multi.stat	multi.stat
Normalization	Normalization
OPLSR.Anal	OPLSR.Anal
parseFisher	parseFisher
parseTukey	parseTukey
PCA.Anal	PCA.Anal
PCA.Flip	PCA.Flip
PCA.GENES	PCA.GENES
Perform.ASCA	Perform.ASCA
Perform.ASCA.permute	Perform.ASCA.permute
Perform.Permut	Perform.Permut
Perform.permutation	Perform.permutation
Perform.UnivROC	Perform.UnivROC
PerformAdductMapping	PerformAdductMapping
PerformApproxMatch	PerformApproxMatch
PerformBatchCorrection	PerformBatchCorrection
PerformCurrencyMapping	PerformCurrencyMapping
PerformCV.explore	PerformCV.explore
PerformCV.test	PerformCV.test
PerformDetailMatch	PerformDetailMatch
PerformEachDEAnal	PerformEachDEAnal
PerformGeneAnnotation	PerformGeneAnnotation
PerformGSEA	PerformGSEA
PerformIndNormalization	PerformIndNormalization
PerformIntegCmpdMapping	PerformIntegCmpdMapping
PerformIntegGeneMapping	PerformIntegGeneMapping
PerformIntegPathwayAnalysis	PerformIntegPathwayAnalysis
PerformKOEnrichAnalysis_KO01100	PerformKOEnrichAnalysis_KO01100
PerformKOEnrichAnalysis_List	PerformKOEnrichAnalysis_List
PerformLimmaDE	PerformLimmaDE
PerformMapping	PerformMapping
performMB	performMB
PerformMetaMerge	PerformMetaMerge
PerformMultiMatch	PerformMultiMatch
PerformMummichog	PerformMummichog
PerformPeakAnnotation	PerformPeakAnnotation
PerformPeakProfiling	PerformPeakProfiling
PerformPowerProfiling	PerformPowerProfiling
PerformPvalCombination	PerformPvalCombination
PerformVoteCounting	PerformVoteCounting
Plot.Permutation	Plot.Permutation
PlotAccuracy	PlotAccuracy
PlotANOVA	PlotANOVA
PlotANOVA2	PlotANOVA2
PlotASCA.Permutation	PlotASCA.Permutation
PlotAscaImpVar	PlotAscaImpVar
PlotASCAModel	PlotASCAModel
PlotCmpdSummary	PlotCmpdSummary
PlotCmpdView	PlotCmpdView
PlotConcRange	PlotConcRange
PlotCorr	PlotCorr
PlotCorrHeatMap	PlotCorrHeatMap
PlotDetailROC	PlotDetailROC
PlotEBAM.A0	PlotEBAM.A0
PlotEBAM.Cmpd	PlotEBAM.Cmpd
PlotEIC	PlotEIC
PlotEnrichNet.Overview	PlotEnrichNet.Overview
PlotFC	PlotFC
PlotHCTree	PlotHCTree
PlotHeatMap	PlotHeatMap
PlotHeatMap2	PlotHeatMap2
PlotImpVar	PlotImpVar
PlotImpVars	PlotImpVars
PlotInmexGraph	PlotInmexGraph
PlotInmexPath	PlotInmexPath
PlotIntegPaths	PlotIntegPaths
PlotInteraction	PlotInteraction
PlotKEGGPath	PlotKEGGPath
PlotKmeans	PlotKmeans
PlotLoadingCmpd	PlotLoadingCmpd
PlotMBTimeProfile	PlotMBTimeProfile
PlotMetaVenn	PlotMetaVenn
PlotMetpaPath	PlotMetpaPath
PlotModelScree	PlotModelScree
PlotMS.RT	PlotMS.RT
PlotMSEA.Overview	PlotMSEA.Overview
PlotNormSummary	PlotNormSummary
PlotOPLS.MDL	PlotOPLS.MDL
PlotOPLS.Permutation	PlotOPLS.Permutation
PlotOPLS.Splot	PlotOPLS.Splot
PlotOPLS2DScore	PlotOPLS2DScore
PlotORA	PlotORA
PlotPathSummary	PlotPathSummary
PlotPCA.overview	PlotPCA.overview
PlotPCA2DScore	PlotPCA2DScore
PlotPCA3DScore	PlotPCA3DScore
PlotPCA3DScoreImg	PlotPCA3DScoreImg
PlotPCABiplot	PlotPCABiplot
PlotPCALoading	PlotPCALoading
PlotPCAPairSummary	PlotPCAPairSummary
PlotPCAScree	PlotPCAScree
PlotPLS.Classification	PlotPLS.Classification
PlotPLS.Imp	PlotPLS.Imp
PlotPLS.Permutation	PlotPLS.Permutation
PlotPLS2DScore	PlotPLS2DScore
PlotPLS3DScore	PlotPLS3DScore
PlotPLS3DScoreImg	PlotPLS3DScoreImg
PlotPLSLoading	PlotPLSLoading
PlotPLSPairSummary	PlotPLSPairSummary
PlotPowerProfile	PlotPowerProfile
PlotPowerStat	PlotPowerStat
PlotProbView	PlotProbView
plotProfile	plotProfile
PlotQEA.MetSet	PlotQEA.MetSet
PlotQEA.Overview	PlotQEA.Overview
PlotRF.Classify	PlotRF.Classify
PlotRF.Outlier	PlotRF.Outlier
PlotRF.VIP	PlotRF.VIP
PlotROC	PlotROC
PlotROC.LRmodel	PlotROC.LRmodel
PlotROCTest	PlotROCTest
PlotRSVM.Classification	PlotRSVM.Classification
PlotRSVM.Cmpd	PlotRSVM.Cmpd
PlotSAM.Cmpd	PlotSAM.Cmpd
PlotSAM.FDR	PlotSAM.FDR
PlotSampleNormSummary	PlotSampleNormSummary
PlotSelectedFeature	PlotSelectedFeature
PlotSigVar	PlotSigVar
PlotSOM	PlotSOM
PlotSPLS2DScore	PlotSPLS2DScore
PlotSPLS3DScore	PlotSPLS3DScore
PlotSPLS3DScoreImg	PlotSPLS3DScoreImg
PlotSPLSDA.Classification	PlotSPLSDA.Classification
PlotSPLSLoading	PlotSPLSLoading
PlotSPLSPairSummary	PlotSPLSPairSummary
PlotSubHeatMap	PlotSubHeatMap
PlotTestAccuracy	PlotTestAccuracy
PlotTT	PlotTT
PlotVolcano	PlotVolcano
PLSDA.CV	PLSDA.CV
PLSDA.Permut	PLSDA.Permut
PLSR.Anal	PLSR.Anal
Predict.class	Predict.class
PrepareIntegData	PrepareIntegData
PrepareNetworkData	PrepareNetworkData
PreparePDFReport	PreparePDFReport
PreparePermResult	PreparePermResult
PreparePrenormData	PreparePrenormData
PrepareQueryJson	PrepareQueryJson
PrepareROCData	PrepareROCData
PrepareROCDetails	PrepareROCDetails
PrepareVennData	PrepareVennData
RankFeatures	RankFeatures
Read.BatchCSVdata	Read.BatchCSVdata
Read.MSspec	Read.MSspec
Read.PeakList	Read.PeakList
Read.PeakListData	Read.PeakListData
Read.TextData	Read.TextData
ReadIndData	ReadIndData
ReadPairFile	ReadPairFile
RecordRCommand	RecordRCommand
rectUnique	rectUnique
RegisterData	RegisterData
RemoveCmpd	RemoveCmpd
RemoveData	RemoveData
RemoveDuplicates	RemoveDuplicates
RemoveFile	RemoveFile
RemoveFolder	RemoveFolder
RemoveGene	RemoveGene
RemoveMissingPercent	RemoveMissingPercent
ReplaceMin	ReplaceMin
RerenderMetPAGraph	RerenderMetPAGraph
RF.Anal	RF.Anal
ROCPredSamplesTable	ROCPredSamplesTable
RSVM	RSVM
RSVM.Anal	RSVM.Anal
SAM.Anal	SAM.Anal
SanityCheckData	SanityCheckData
SanityCheckIndData	SanityCheckIndData
SanityCheckMummichogData	SanityCheckMummichogData
SaveTransformedData	SaveTransformedData
SearchByCompound	SearchByCompound
SearchByName	SearchByName
SearchMsetLibraries	SearchMsetLibraries
SearchNetDB	SearchNetDB
SelectMultiData	SelectMultiData
SetAnalysisMode	SetAnalysisMode
SetAnnotationParam	SetAnnotationParam
SetCachexiaSetUsed	SetCachexiaSetUsed
SetCandidate	SetCandidate
SetCurrentGroups	SetCurrentGroups
SetCurrentMsetLib	SetCurrentMsetLib
SetCustomData	SetCustomData
SetDesignType	SetDesignType
SetEBAMSigMat	SetEBAMSigMat
SetKEGG.PathLib	SetKEGG.PathLib
SetMetabolomeFilter	SetMetabolomeFilter
SetOrganism	SetOrganism
SetPeakList.GroupValues	SetPeakList.GroupValues
SetPeakParam	SetPeakParam
SetSAMSigMat	SetSAMSigMat
SetSMPDB.PathLib	SetSMPDB.PathLib
Setup.AdductData	Setup.AdductData
Setup.BiofluidType	Setup.BiofluidType
Setup.ConcData	Setup.ConcData
Setup.HMDBReferenceMetabolome	Setup.HMDBReferenceMetabolome
Setup.KEGGReferenceMetabolome	Setup.KEGGReferenceMetabolome
Setup.MapData	Setup.MapData
Setup.UserMsetLibData	Setup.UserMsetLibData
SetupKEGGLinks	SetupKEGGLinks
SetupMSdataMatrix	SetupMSdataMatrix
SetupSMPDBLinks	SetupSMPDBLinks
SOM.Anal	SOM.Anal
sparse.mint.block_iteration	sparse.mint.block_iteration
splsda	splsda
SPLSR.Anal	SPLSR.Anal
SumNorm	SumNorm
template.match	template.match
Ttests.Anal	Ttests.Anal
UnzipUploadedFile	UnzipUploadedFile
UpdateIntegPathwayAnalysis	UpdateIntegPathwayAnalysis
UpdateMummichogParameters	UpdateMummichogParameters
UpdateOPLS.Splot	UpdateOPLS.Splot
UpdatePCA.Loading	UpdatePCA.Loading
UpdatePLS.Loading	UpdatePLS.Loading
usr2png	usr2png
Volcano.Anal	Volcano.Anal
XSet2MSet	XSet2MSet
