Package: IntLIM
Type: Package
Title: Integration of Omics Data Using Linear Modeling
Version: 0.1.0
Authors@R: c(
 person("Jalal", "Siddiqui", email = "Jalal.Siddiqui@osumc.edu", role="aut"),
 person("Mingrui", "Liu", email="liu.4800@buckeyemail.osu.edu", role="aut"),
 person("Ewy", "Mathe", email="ewy.mathe@osumc.edu", role=c("aut","cre")))
Maintainer: The package maintainer <ewy.mathe@osumc.edu>
Description: This workflow takes normalized gene expression and metabolite levels, 
  meta-information on genes, metabolites, and samples to identify gene:metabolite pairs 
  that are significantly associated with an outcome (e.g. tumors).
License: GPL-2
Depends: R (>= 3.2.0)
Imports: shiny, shinydashboard, shinyjs, rmarkdown, shinyFiles,
        Biobase, MultiDataSet, methods, reshape2, magrittr,
        GenomicRanges, htmltools, highcharter, RColorBrewer, parallel,
        BiocGenerics, tidyr, dplyr, purrr, heatmaply, plotly, DT
Suggests: knitr
Encoding: UTF-8
LazyData: TRUE
RoxygenNote: 6.0.1
NeedsCompilation: no
Collate: 'AllClasses.R' 'MetaboliteSet_addMetabolite.R'
        'internalfunctions.R' '01_ReadData.R' '02_FilterData.R'
        '03_RunIntLim.R' '04_ProcessResults.R'
        'IntLimResults_extendedfunctions.R'
        'MultiDataSet_extendedfunctions.R' 'plottingfunctions.R'
        'ramplinkedinfunctions.R' 'runShiny.R' 'statsfunctions.R'
        'writingfunctions.R'
VignetteBuilder: knitr
Author: Jalal Siddiqui [aut],
  Mingrui Liu [aut],
  Ewy Mathe [aut, cre]
Built: R 4.2.2; ; 2022-11-06 00:43:03 UTC; unix
