Package: immunedeconv
Title: Methods for immune cell deconvolution
Description: Collection of methods for immune cell deconvolution from bulk RNA-seq samples.
Version: 2.0.4
Authors@R: c(
    person("Lorenzo", "Merotto", role=c("aut", "cre"), email="lorenzo.merotto@uibk.ac.at"),
    person("Gregor", "Sturm", role=c("aut"), email="mail@gregor-sturm.de")
  )
biocViews:
Depends: R (>= 4.1), EPIC
Imports: dplyr (>= 0.7), magrittr (>= 1.5), readr (>= 1.1), readxl (>=
        1.0), testit (>= 0.7), tibble (>= 1.4.2), methods (>= 3.4),
        data.tree (>= 0.7), limSolve (>= 1.5.5.1), e1071 (>= 1.6),
        parallel (>= 3.4), rlang, BiocParallel, preprocessCore,
        Biobase, biomaRt, sva, xCell, MCPcounter, utils, grDevices,
        graphics, stats, MASS, ConsensusTME, ComICS, mMCPcounter,
        matrixStats, stringr
Suggests: testthat, knitr, rmarkdown, pkgdown, devtools, DiagrammeR,
        tidyr, ggplot2, webshot
Remotes: dviraran/xCell, GfellerLab/EPIC, ebecht/MCPcounter/Source,
        cit-bioinfo/mMCP-counter, cansysbio/ConsensusTME
VignetteBuilder: knitr
License: BSD_3_clause + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
LazyData: true
URL: https:/omnideconv.org/immunedeconv,
        https://github.com/omnideconv/immunedeconv
BugReports: https://github.com/omnideconv/immunedeconv/issues
RoxygenNote: 7.2.0
Author: Lorenzo Merotto [aut, cre],
  Gregor Sturm [aut]
Maintainer: Lorenzo Merotto <lorenzo.merotto@uibk.ac.at>
Built: R 4.2.2; ; 2022-11-09 20:42:12 UTC; unix
