Package: ggmsa
Title: Plot Multiple Sequence Alignment using 'ggplot2'
Version: 1.0.2
Authors@R: c( person("Guangchuang", "Yu", email = "guangchuangyu@gmail.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0002-6485-8781")),
              person("Lang", "Zhou",      email = "nyzhoulang@gmail.com",    role = "aut"),
              person("Shuangbin", "Xu",   email = "xshuangbin@163.com",    role = "ctb"),
              person("Huina", "Huang",    email = "1185796994@qq.com",       role = "ctb"))
Description: Supports visualizing multiple sequence alignment of DNA and protein sequences using 'ggplot2'. It supports a number of colour schemes, including Chemistry, Clustal, Shapely, Taylor and Zappo. Multiple sequence alignment can easily be combined with other 'ggplot2' plots, such as aligning a phylogenetic tree produced by 'ggtree' with multiple sequence alignment.
Depends: R (>= 3.5.0)
Imports: Biostrings, ggplot2, magrittr, tidyr, utils, stats, stringr,
        aplot, RColorBrewer, ggalt, ggforce, methods, dplyr, R4RNA
Suggests: ggtreeExtra, ggtree (>= 1.17.1), ape, cowplot, knitr,
        prettydoc, rmarkdown, seqmagick, readxl, ggnewscale,
        kableExtra, gggenes
License: Artistic-2.0
Encoding: UTF-8
RoxygenNote: 7.1.1
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2021-08-03 07:37:14 UTC; ygc
Author: Guangchuang Yu [aut, cre] (<https://orcid.org/0000-0002-6485-8781>),
  Lang Zhou [aut],
  Shuangbin Xu [ctb],
  Huina Huang [ctb]
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Repository: CRAN
Date/Publication: 2021-08-03 08:00:05 UTC
Built: R 4.1.1; ; 2021-08-11 15:22:24 UTC; unix
