available_colors	available_colors
available_fonts	available_fonts
available_msa	available_msa
color_Clustal	color_Clustal
color_scheme	color_scheme
facet_msa	facet_msa
geom_GC	geom_GC
geom_helix	geom_helix
geom_msa	geom_msa
geom_msaBar	geom_msaBar
geom_seed	geom_seed
geom_seqlogo	geom_seqlogo
get_consensus	get_consensus
gghelix	gghelix
ggmsa	ggmsa
ggSeqBundle	ggSeqBundle
msa2tidy	msa2tidy
plot	plot-methods
plot,SeqDiff,ANY-method	plot-methods
readSSfile	readSSfile
seqdiff	seqdiff
SeqDiff-class	show-methods
seqlogo	seqlogo
show	show-methods
show,SeqDiff-method	show-methods
simplot	simplot
tidy_color	tidy_color
tidy_msa	tidy_msa
