# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Sun May 23 14:15:22 2021
# ------------------------------------------------

package:
  name: r-eacon
  version: 0.3.6
source:
  sha256: 48a34d6bd350909d9803880b76d1234cc2502494f1e7e6ab9e5bf5616385fe42
  url: https://github.com/gustaveroussy/EaCoN/archive/refs/tags/0.3.6.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r40hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _r-mutex 1.0.1 anacondar_1
    - ascat 2.5.2 r40hdfd78af_3
    - binutils_impl_linux-64 2.35.1 h193b22a_2
    - binutils_linux-64 2.35 h67ddf6f_30
    - bioconductor-affxparser 1.62.0 r40h399db7b_1
    - bioconductor-aroma.light 3.20.0 r40hdfd78af_1
    - bioconductor-biobase 2.50.0 r40hd029910_1
    - bioconductor-biocgenerics 0.36.0 r40hdfd78af_1
    - bioconductor-biocparallel 1.24.1 r40h399db7b_0
    - bioconductor-biostrings 2.58.0 r40hd029910_1
    - bioconductor-bsgenome 1.58.0 r40hdfd78af_1
    - bioconductor-bsgenome.hsapiens.1000genomes.hs37d5 0.99.1 r40hdfd78af_6
    - bioconductor-copynumber 1.30.0 r40hdfd78af_1
    - bioconductor-delayedarray 0.16.3 r40hd029910_0
    - bioconductor-genomeinfodb 1.26.4 r40hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.4 r40hdfd78af_2
    - bioconductor-genomicalignments 1.26.0 r40hd029910_1
    - bioconductor-genomicranges 1.42.0 r40hd029910_1
    - bioconductor-iranges 2.24.1 r40hd029910_0
    - bioconductor-limma 3.46.0 r40hd029910_1
    - bioconductor-matrixgenerics 1.2.1 r40hdfd78af_0
    - bioconductor-rhdf5 2.34.0 r40h399db7b_1
    - bioconductor-rhdf5filters 1.2.0 r40h399db7b_1
    - bioconductor-rhdf5lib 1.12.1 r40hd029910_0
    - bioconductor-rhtslib 1.22.0 r40hd029910_1
    - bioconductor-rsamtools 2.6.0 r40h399db7b_1
    - bioconductor-rtracklayer 1.50.0 r40h7f5ccec_2
    - bioconductor-s4vectors 0.28.1 r40hd029910_0
    - bioconductor-summarizedexperiment 1.20.0 r40hdfd78af_1
    - bioconductor-xvector 0.30.0 r40hd029910_1
    - bioconductor-zlibbioc 1.36.0 r40hd029910_1
    - bwidget 1.9.14 ha770c72_0
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.17.1 h7f98852_1
    - ca-certificates 2020.12.5 ha878542_0
    - cairo 1.16.0 h6cf1ce9_1008
    - curl 7.76.1 hea6ffbf_2
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.13.1 hba837de_1005
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.10.4 h0708190_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 9.3.0 h70c0ae5_19
    - gcc_linux-64 9.3.0 hf25ea35_30
    - gettext 0.19.8.1 h0b5b191_1005
    - gfortran_impl_linux-64 9.3.0 hc4a2995_19
    - gfortran_linux-64 9.3.0 hdc58fab_30
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.6 he838d99_2
    - gxx_impl_linux-64 9.3.0 hd87eabc_19
    - gxx_linux-64 9.3.0 h3fbe746_30
    - harfbuzz 2.8.1 h83ec7ef_0
    - icu 68.1 h58526e2_0
    - jpeg 9d h36c2ea0_0
    - kernel-headers_linux-64 2.6.32 h77966d4_13
    - krb5 1.19.1 hcc1bbae_0
    - ld_impl_linux-64 2.35.1 hea4e1c9_2
    - libblas 3.9.0 9_openblas
    - libcblas 3.9.0 9_openblas
    - libcurl 7.76.1 h2574ce0_2
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.3 h58526e2_2
    - libgcc-devel_linux-64 9.3.0 h7864c58_19
    - libgcc-ng 9.3.0 h2828fa1_19
    - libgfortran-ng 9.3.0 hff62375_19
    - libgfortran5 9.3.0 hff62375_19
    - libglib 2.68.2 h3e27bee_0
    - libgomp 9.3.0 h2828fa1_19
    - libiconv 1.16 h516909a_0
    - liblapack 3.9.0 9_openblas
    - libnghttp2 1.43.0 h812cca2_0
    - libopenblas 0.3.15 pthreads_h8fe5266_1
    - libpng 1.6.37 h21135ba_2
    - libssh2 1.9.0 ha56f1ee_6
    - libstdcxx-devel_linux-64 9.3.0 hb016644_19
    - libstdcxx-ng 9.3.0 h6de172a_19
    - libtiff 4.2.0 hbd63e13_2
    - libuuid 2.32.1 h7f98852_1000
    - libwebp-base 1.2.0 h7f98852_2
    - libxcb 1.13 h7f98852_1003
    - libxml2 2.9.12 h72842e0_0
    - lz4-c 1.9.3 h9c3ff4c_0
    - make 4.3 hd18ef5c_1
    - ncurses 6.2 h58526e2_4
    - openssl 1.1.1k h7f98852_0
    - pandoc 2.13 h7f98852_0
    - pango 1.48.5 hb8ff022_0
    - pcre 8.44 he1b5a44_0
    - pcre2 10.36 h032f7d1_1
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-ade4 1.7_16 r40h30ea16f_1
    - r-assertthat 0.2.1 r40h6115d3f_2
    - r-backports 1.2.1 r40hcfec24a_0
    - r-base 4.0.5 h9e01966_1
    - r-base64enc 0.1_3 r40hcfec24a_1004
    - r-bedr 1.0.7 r40h6115d3f_1
    - r-bh 1.75.0_0 r40hc72bb7e_0
    - r-bitops 1.0_7 r40hcfec24a_0
    - r-brio 1.1.2 r40hcfec24a_0
    - r-callr 3.7.0 r40hc72bb7e_0
    - r-changepoint 2.2.2 r40hcfec24a_1004
    - r-cli 2.5.0 r40hc72bb7e_0
    - r-clipr 0.7.1 r40h142f84f_0
    - r-codetools 0.2_18 r40hc72bb7e_0
    - r-cpp11 0.2.7 r40hc72bb7e_0
    - r-crayon 1.4.1 r40hc72bb7e_0
    - r-crosstalk 1.1.1 r40hc72bb7e_0
    - r-data.table 1.14.0 r40hcfec24a_0
    - r-desc 1.3.0 r40hc72bb7e_0
    - r-diffobj 0.3.4 r40hcfec24a_0
    - r-digest 0.6.27 r40h03ef668_0
    - r-doparallel 1.0.16 r40h142f84f_0
    - r-dplyr 1.0.6 r40h03ef668_1
    - r-dt 0.18 r40hc72bb7e_0
    - r-ellipsis 0.3.2 r40hcfec24a_0
    - r-evaluate 0.14 r40h6115d3f_2
    - r-facets 0.6.1 r40h3d09ca8_0
    - r-fansi 0.4.2 r40hcfec24a_0
    - r-foreach 1.5.1 r40h142f84f_0
    - r-formatr 1.9 r40hc72bb7e_0
    - r-futile.logger 1.4.3 r40h6115d3f_1003
    - r-futile.options 1.0.1 r40h6115d3f_1002
    - r-generics 0.1.0 r40hc72bb7e_0
    - r-glue 1.4.2 r40hcfec24a_0
    - r-highr 0.9 r40hc72bb7e_0
    - r-hms 1.1.0 r40hc72bb7e_0
    - r-htmltools 0.5.1.1 r40h03ef668_0
    - r-htmlwidgets 1.5.3 r40hc72bb7e_0
    - r-iotools 0.3_1 r40hcfec24a_1
    - r-iterators 1.0.13 r40h142f84f_0
    - r-jsonlite 1.7.2 r40hcfec24a_0
    - r-knitr 1.33 r40hc72bb7e_0
    - r-lambda.r 1.2.4 r40h6115d3f_1
    - r-later 1.2.0 r40h03ef668_0
    - r-lattice 0.20_44 r40hcfec24a_0
    - r-lazyeval 0.2.2 r40hcfec24a_2
    - r-lifecycle 1.0.0 r40hc72bb7e_0
    - r-magrittr 2.0.1 r40hcfec24a_1
    - r-markdown 1.1 r40hcfec24a_1
    - r-mass 7.3_54 r40hcfec24a_0
    - r-matrix 1.3_3 r40he454529_0
    - r-matrixstats 0.58.0 r40hcfec24a_0
    - r-mclust 5.4.7 r40h52d45c5_0
    - r-mime 0.10 r40hcfec24a_0
    - r-pbapply 1.4_3 r40h6115d3f_0
    - r-pctgcdata 0.3.0 r40h9ee0642_1
    - r-pillar 1.6.1 r40hc72bb7e_0
    - r-pixmap 0.4_12 r40hc72bb7e_0
    - r-pkgconfig 2.0.3 r40h6115d3f_1
    - r-pkgload 1.2.1 r40h03ef668_0
    - r-praise 1.0.0 r40h6115d3f_1004
    - r-prettyunits 1.1.1 r40h6115d3f_1
    - r-processx 3.5.2 r40hcfec24a_0
    - r-progress 1.2.2 r40h6115d3f_2
    - r-promises 1.2.0.1 r40h03ef668_0
    - r-ps 1.6.0 r40hcfec24a_0
    - r-purrr 0.3.4 r40hcfec24a_1
    - r-r.devices 2.17.0 r40hc72bb7e_0
    - r-r.methodss3 1.8.1 r40h6115d3f_0
    - r-r.oo 1.24.0 r40h6115d3f_0
    - r-r.utils 2.10.1 r40h6115d3f_0
    - r-r6 2.5.0 r40hc72bb7e_0
    - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
    - r-rcpp 1.0.6 r40h03ef668_0
    - r-rcurl 1.98_1.3 r40hcfec24a_0
    - r-readr 1.4.0 r40h1b71b39_0
    - r-rematch2 2.1.2 r40h6115d3f_1
    - r-rlang 0.4.11 r40hcfec24a_0
    - r-rmarkdown 2.8 r40hc72bb7e_0
    - r-rprojroot 2.0.2 r40hc72bb7e_0
    - r-rstudioapi 0.13 r40hc72bb7e_0
    - r-segmented 1.3_3 r40hc72bb7e_0
    - r-seqinr 4.2_5 r40hcfec24a_0
    - r-seqminer 8.0 r40h2b0173a_1
    - r-sequenza 3.0.0 r40h3342da4_3
    - r-snow 0.4_3 r40h6115d3f_1002
    - r-sp 1.4_5 r40hcfec24a_0
    - r-squash 1.0.9 r40_1
    - r-stringi 1.6.2 r40hcabe038_0
    - r-stringr 1.4.0 r40h6115d3f_2
    - r-testthat 3.0.2 r40h03ef668_0
    - r-tibble 3.1.2 r40hcfec24a_0
    - r-tidyselect 1.1.1 r40hc72bb7e_0
    - r-tinytex 0.31 r40hc72bb7e_0
    - r-utf8 1.2.1 r40hcfec24a_0
    - r-vctrs 0.3.8 r40hcfec24a_0
    - r-venndiagram 1.6.20 r40h6115d3f_1002
    - r-waldo 0.2.5 r40hc72bb7e_0
    - r-withr 2.4.2 r40hc72bb7e_0
    - r-xfun 0.23 r40hcfec24a_0
    - r-xml 3.99_0.6 r40hcfec24a_0
    - r-yaml 2.2.1 r40hcfec24a_1
    - r-zeallot 0.1.0 r40h6115d3f_1002
    - r-zoo 1.8_9 r40hcfec24a_0
    - readline 8.1 h46c0cb4_0
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 h77966d4_13
    - tk 8.6.10 h21135ba_1
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.1 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h516909a_1010
    - zstd 1.4.9 ha95c52a_0
  run:
    - ascat
    - bioconductor-affxparser
    - bioconductor-aroma.light
    - bioconductor-biostrings
    - bioconductor-bsgenome.hsapiens.1000genomes.hs37d5
    - bioconductor-copynumber
    - bioconductor-genomicranges
    - bioconductor-limma
    - bioconductor-rhdf5
    - bioconductor-rsamtools
    - r-base >=4.0,<4.1.0a0
    - r-bedr
    - r-changepoint
    - r-data.table
    - r-doparallel
    - r-dplyr
    - r-dt
    - r-facets
    - r-foreach
    - r-iotools
    - r-mclust
    - r-rmarkdown
    - r-seqinr
    - r-sequenza
test:
  commands:
    - $R -e "library('EaCoN')"
about:
  home: https://github.com/gustaveroussy/EaCoN
  license: MIT
  summary: Easy Copy Number. EaCoN aims to be an all-packed in, user-friendly solution
    to perform relative or absolute copy-number analysis for multiple sources of data,
    with three different segmenters available (and corresponding three copy-number
    modelization methods)
extra:
  copy_test_source_files: true
  final: true
  recipe-maintainers:
    - lecorguille
