Encoding: UTF-8
Package: EaCoN
Type: Package
Title: EaCoN : Easy Copy Number !
Version: 0.3.4-1
Date: 2018-12-10
Author: Bastien Job
Authors@R: person("Bastien", "Job", email = "bastien.job@inserm.fr", role = c("aut", "cre"))
Depends: R(>= 3.1.0)
Imports: affxparser, aroma.light, ASCAT, Biostrings, BSgenome,
        changepoint, data.table, doParallel, dplyr, DT, facets,
        foreach, GenomeInfoDb, GenomicRanges, iotools, IRanges, limma,
        mclust, R.utils, rhdf5, seqinr, sequenza
Suggests: BSgenome.Hsapiens.UCSC.hg18, BSgenome.Hsapiens.UCSC.hg19,
        BSgenome.Hsapiens.UCSC.hg38,
        BSgenome.Hsapiens.1000genomes.hs37d5, Rsamtools,
        affy.CN.norm.data, apt.cytoscan.2.4.0, apt.oncoscan.2.4.0,
        apt.snp6.1.20.0, rcnorm, rmarkdown
biocViews: Software
BugReports: https://github.com/gustaveroussy/EaCoN/issues
Description: Easy copy-number analysis for Affymetrix microarrays (snp6.0, CytoScanHD, CytoScan750K & OncoScan) and whole exome sequencing data.
License: MIT + file LICENSE
LazyData: false
Byte-Compile: yes
Maintainer: Bastien Job <bastien.job@inserm.fr>
Built: R 3.6.1; ; 2019-10-31 01:03:44 UTC; unix
