Package: DESeqAnalysis
Title: Acid Genomics DESeq2 Analysis Utilities
Description: Toolkit for performing differential expression with DESeq2.
Version: 0.7.1
Date: 2024-03-27
Authors@R: c(
    person(
        given = "Michael",
        family = "Steinbaugh",
        email = "mike@steinbaugh.com",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-2403-2221")
    ),
    person(
        given = "Acid Genomics",
        role = c("cph", "fnd")
    ))
URL: https://r.acidgenomics.com/packages/deseqanalysis/,
        https://github.com/acidgenomics/r-deseqanalysis/
BugReports: https://github.com/acidgenomics/r-deseqanalysis/issues/
License: AGPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.3)
Imports: AcidBase (>= 0.7.3), AcidCLI (>= 0.3.0), AcidExperiment (>=
        0.5.4), AcidGenerics (>= 0.7.7), AcidGenomes (>= 0.7.2),
        AcidMarkdown (>= 0.3.0), AcidPlots (>= 0.7.3), AcidPlyr (>=
        0.5.4), BiocGenerics (>= 0.48.0), DESeq2 (>= 1.42.0), IRanges
        (>= 2.36.0), S4Vectors (>= 0.40.0), SummarizedExperiment (>=
        1.32.0), ggplot2 (>= 3.5.0), goalie (>= 0.7.7), pipette (>=
        0.15.2), syntactic (>= 0.7.1), methods, stats, utils
Suggests: ComplexUpset (>= 1.3.3), apeglm (>= 1.24.0), ashr (>=
        2.2.63), basejump (>= 0.18.0), ggrepel (>= 0.9.5), knitr (>=
        1.45), pheatmap (>= 1.0.12), rmarkdown (>= 2.26), testthat (>=
        3.2.1), tximport (>= 1.30.0), tximportData (>= 1.30.0)
Additional_repositories: https://r.acidgenomics.com
Config/testthat/edition: 3
Config/testthat/parallel: true
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews: DifferentialExpression, RNASeq
Author: Michael Steinbaugh [aut, cre] (<https://orcid.org/0000-0002-2403-2221>),
  Acid Genomics [cph, fnd]
Maintainer: Michael Steinbaugh <mike@steinbaugh.com>
Built: R 4.4.2; ; 2024-12-26 12:34:38 UTC; unix
