Package: DESeqAnalysis
Title: Acid Genomics DESeq2 Analysis Utilities
Description: Toolkit for performing differential expression with DESeq2.
Version: 0.6.8
Date: 2023-04-28
Authors@R: c(
    person(
        given = "Michael",
        family = "Steinbaugh",
        email = "mike@steinbaugh.com",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-2403-2221")
    ),
    person(
        given = "Acid Genomics",
        role = c("cph", "fnd")
    ))
URL: https://r.acidgenomics.com/packages/deseqanalysis/,
        https://github.com/acidgenomics/r-deseqanalysis/
BugReports: https://github.com/acidgenomics/r-deseqanalysis/issues/
License: AGPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.2), DESeq2 (>= 1.38.0)
Imports: AcidBase (>= 0.6.15), AcidCLI (>= 0.2.7), AcidExperiment (>=
        0.4.7), AcidGenerics (>= 0.6.7), AcidGenomes (>= 0.5.0),
        AcidMarkdown (>= 0.2.5), AcidPlots (>= 0.5.5), AcidPlyr (>=
        0.3.10), BiocGenerics (>= 0.44.0), IRanges (>= 2.32.0),
        S4Vectors (>= 0.36.0), SummarizedExperiment (>= 1.28.0),
        ggplot2 (>= 3.4.2), goalie (>= 0.6.9), pipette (>= 0.10.9),
        stringi (>= 1.7.12), syntactic (>= 0.6.5), methods, stats,
        utils
Suggests: apeglm (>= 1.20.0), ashr (>= 2.2.54), basejump (>= 0.16.5),
        knitr (>= 1.42), rmarkdown (>= 2.21), testthat (>= 3.1.7),
        tximport (>= 1.26.0)
Additional_repositories: https://r.acidgenomics.com
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Author: Michael Steinbaugh [aut, cre] (<https://orcid.org/0000-0002-2403-2221>),
  Acid Genomics [cph, fnd]
Maintainer: Michael Steinbaugh <mike@steinbaugh.com>
Built: R 4.3.1; ; 2023-07-19 08:47:20 UTC; unix
