Package: DESeqAnalysis
Title: Acid Genomics DESeq2 Analysis Utilities
Description: Toolkit for performing differential expression with DESeq2.
Version: 0.6.6
Date: 2022-10-25
Authors@R: c(
    person(
        given = "Michael",
        family = "Steinbaugh",
        email = "mike@steinbaugh.com",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-2403-2221")
    ),
    person(
        given = "Acid Genomics",
        role = c("cph", "fnd")
    ))
URL: https://r.acidgenomics.com/packages/deseqanalysis/,
        https://github.com/acidgenomics/r-deseqanalysis/
BugReports: https://github.com/acidgenomics/r-deseqanalysis/issues/
License: AGPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.2), DESeq2 (>= 1.36.0)
Imports: AcidBase (>= 0.6.8), AcidCLI (>= 0.2.4), AcidExperiment (>=
        0.4.4), AcidGenerics (>= 0.6.4), AcidGenomes (>= 0.4.4),
        AcidMarkdown (>= 0.2.5), AcidPlots (>= 0.5.2), AcidPlyr (>=
        0.3.2), BiocGenerics (>= 0.42.0), IRanges (>= 2.30.1),
        S4Vectors (>= 0.34.0), SummarizedExperiment (>= 1.26.1),
        ggplot2 (>= 3.3.6), goalie (>= 0.6.6), methods, pipette (>=
        0.10.0), stats, stringi (>= 1.7.8), syntactic (>= 0.6.3), utils
Suggests: apeglm (>= 1.18.0), ashr (>= 2.2.54), basejump (>= 0.16.1),
        knitr (>= 1.40), rmarkdown (>= 2.17), testthat (>= 3.0.0),
        tximport (>= 1.24.0)
Additional_repositories: https://r.acidgenomics.com
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.1
Author: Michael Steinbaugh [aut, cre] (<https://orcid.org/0000-0002-2403-2221>),
  Acid Genomics [cph, fnd]
Maintainer: Michael Steinbaugh <mike@steinbaugh.com>
Built: R 4.2.2; ; 2022-11-12 09:00:30 UTC; unix
