Package: DESeqAnalysis
Title: DESeq2 Analysis Utilities
Description: Toolkit for performing differential expression with DESeq2.
Version: 0.3.9
Date: 2020-10-08
Authors@R: c(
    person(
        given = "Michael",
        family = "Steinbaugh",
        email = "mike@steinbaugh.com",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-2403-2221")
    ),
    person(
        given = "Acid Genomics",
        role = c("cph", "fnd")
    ))
URL: https://deseqanalysis.acidgenomics.com/,
        https://github.com/acidgenomics/DESeqAnalysis/
BugReports: https://github.com/acidgenomics/DESeqAnalysis/issues/
License: GPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.0), basejump (>= 0.13.1), DESeq2 (>= 1.28)
Imports: AcidGenerics (>= 0.4.0), AcidPlots (>= 0.3.0), BiocGenerics,
        IRanges, S4Vectors, SummarizedExperiment, cli (>= 2.0), cowplot
        (>= 1.0), ggplot2 (>= 3.3), goalie (>= 0.4.9), knitr, methods,
        rlang (>= 0.4), scales, stats, stringr (>= 1.4), utils
Suggests: BiocStyle, apeglm (>= 1.10), ashr (>= 2.2), roxygen2,
        testthat, tximport (>= 1.16), viridis
biocViews: DataRepresentation, DifferentialExpression, GeneExpression,
        MultipleComparison, RNASeq, Transcription, Visualization
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Additional_repositories: https://r.acidgenomics.com
Author: Michael Steinbaugh [aut, cre] (<https://orcid.org/0000-0002-2403-2221>),
  Acid Genomics [cph, fnd]
Maintainer: Michael Steinbaugh <mike@steinbaugh.com>
Built: R 4.0.3; ; 2020-10-29 13:08:15 UTC; unix
