Package: DESeqAnalysis
Title: DESeq2 Analysis Utilities
Description: Toolkit for performing differential expression with DESeq2.
Version: 0.2.20
Date: 2020-05-11
Authors@R: c(
    person(
        given = "Michael",
        family = "Steinbaugh",
        email = "mike@steinbaugh.com",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-2403-2221")
    ),
    person(
        given = "Acid Genomics",
        role = c("cph", "fnd")
    ))
URL: https://deseqanalysis.acidgenomics.com/,
        https://github.com/acidgenomics/DESeqAnalysis/
BugReports: https://github.com/acidgenomics/DESeqAnalysis/issues/
License: GPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 3.6), basejump (>= 0.12.6), DESeq2 (>= 1.26)
Imports: BiocGenerics (>= 0.32), IRanges (>= 2.20), S4Vectors (>=
        0.24), SummarizedExperiment (>= 1.16), UpSetR (>= 1.4),
        acidgenerics (>= 0.3.4), acidplots (>= 0.2.26), cowplot (>=
        1.0), ggplot2 (>= 3.2), goalie (>= 0.4.4), knitr (>= 1.25),
        rlang (>= 0.4), stringr (>= 1.4), methods, scales, stats, utils
Suggests: BiocStyle (>= 2.14), apeglm (>= 1.8), ashr (>= 2.2), patrick
        (>= 0.0.1), roxygen2 (>= 7.1), testthat (>= 2.3), tximport (>=
        1.14), viridis (>= 0.5)
Remotes: acidgenomics/acidgenerics, acidgenomics/acidplots,
        acidgenomics/basejump, acidgenomics/goalie
biocViews: DataRepresentation, DifferentialExpression, GeneExpression,
        MultipleComparison, RNASeq, Transcription, Visualization
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.0
VignetteBuilder: knitr
Author: Michael Steinbaugh [aut, cre] (<https://orcid.org/0000-0002-2403-2221>),
  Acid Genomics [cph, fnd]
Maintainer: Michael Steinbaugh <mike@steinbaugh.com>
Built: R 3.6.3; ; 2020-05-12 14:27:03 UTC; unix
