Package: DESeqAnalysis
Title: DESeq2 Analysis Utilities
Description: Toolkit for performing differential expression with DESeq2.
Version: 0.2.13
Date: 2019-11-19
Authors@R: c(
    person(
        given = "Michael",
        family = "Steinbaugh",
        email = "mike@steinbaugh.com",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-2403-2221")
    ),
    person(
        given = "Acid Genomics",
        role = c("cph", "fnd")
    ))
URL: https://deseqanalysis.acidgenomics.com/,
        https://github.com/acidgenomics/DESeqAnalysis/
BugReports: https://github.com/acidgenomics/DESeqAnalysis/issues/
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Depends: R (>= 3.6), basejump (>= 0.11.23), DESeq2 (>= 1.26)
Imports: BiocGenerics (>= 0.32), IRanges (>= 2.20), S4Vectors (>=
        0.24), SummarizedExperiment (>= 1.16), UpSetR (>= 1.4),
        acidplots (>= 0.2.19), bioverbs (>= 0.2.12), cowplot (>= 1.0),
        ggplot2 (>= 3.2), goalie (>= 0.4.0), knitr (>= 1.25), rlang (>=
        0.4), stringr (>= 1.4), methods, scales, stats, utils
Suggests: BiocStyle (>= 2.14), acidroxygen (>= 0.1.4), apeglm (>= 1.8),
        ashr (>= 2.2), patrick (>= 0.0.1), roxygen2 (>= 6.1), testthat
        (>= 2.3), tximport (>= 1.14), viridis (>= 0.5)
Remotes: acidgenomics/acidplots, acidgenomics/acidroxygen,
        acidgenomics/basejump, acidgenomics/bioverbs,
        acidgenomics/goalie
biocViews: DataRepresentation, DifferentialExpression, GeneExpression,
        MultipleComparison, RNASeq, Transcription, Visualization
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.0.0
VignetteBuilder: knitr
Author: Michael Steinbaugh [aut, cre] (<https://orcid.org/0000-0002-2403-2221>),
  Acid Genomics [cph, fnd]
Maintainer: Michael Steinbaugh <mike@steinbaugh.com>
Built: R 3.6.1; ; 2019-11-20 22:19:17 UTC; unix
