# ddiR: The Omics Discovery Index R package

## Documentation for package ‘ddiR’ version 0.0.3

- DESCRIPTION file.

## Help Pages

database-method | Returns an acession id
database-method | Returns an acession id
dataset.id-method | Returns an acession id
dataset.id-method | Returns an acession id
dataset.to.dataframe | Returns a data frame from a DatasetDetail list
DatasetDetail-class | DatasetDetail provides the information about an specific Facet in the API
DatasetResult-class | DatasetResult, provides a list of datasets for an specific query
DatasetSimilars-class | DatasetSimilars, This class contains the information of one particuar dataset in OmicsDI
DatasetSummary-class | DatasetSummary, This class contains the information of one particuar dataset in OmicsDI
DictWord-class | DictWord, This class contains the information of a list of Dictionary Words
Facet-class | Facet provides the information about an specific Facet in the API
FacetValue-class | FacetValue provides the information about an specific Facet in the API
from.json.BiologicalSimilars | from.json.BiologicalSimilars
from.json.BiologicalSimilarsList | from.json.BiologicalSimilarsList
from.json.DatasetDetail | from.json.DatasetDetail This function converts a json DatasetDetail to a DatasetDetail
from.json.DataSetResult | Returns a DatasetResult instance from a JSON string representation
from.json.DatasetResults | from.json.DatasetResults
from.json.DatasetSummary | from.json.DatasetSummary
from.json.Facet | from.json.Facet
from.json.FacetValue | from.json.FacetValue
from.json.LabMember | from.json.LabMember
from.json.Organism | from.json.Organism
from.json.Protocol | from.json.Protocol This function converts a json Protocol object to a Protocol object
get.BiologicalSimilars | get.BiologicalSimilars Returns a Biological Molecules similarity for a Dataset
get.dataset.link-method | Returns the dataset full link
get.dataset.name-method | Returns the original dataset title
get.dataset.omics-method | Returns the type of omics experiment (e.g. Proteomics, Genomics)
get.dataset.tissues-method | Returns tissues information described in the dataset
get.DatasetDetail | Returns a DatasetDetail from OmicsDI
get.description-method | Returns the dataset description
get.diseases-method | Returns the diseases under study
get.instruments-method | Returns the instruments used to generate the dataset
get.MetadataSimilars | get.MetadataSimilars
get.organisms-method | Returns the organisms described in the dataset
get.publication.date-method | Returns the dataset publication date
get.publication.ids-method | Returns the publications IDs associated to the dataset
Item-class | Item, This class contains the information of an Item in the Dictonary
LabMember-class | LabMember retrieve the information of a lab member including affilation, name, etc
list.to.data.frame | Returns a data frame from a list of objects
Organism-class | Organism return an organism entity including its name and accession
Protocol-class | Protocol retirve the information of a Protocol used in the experiment
PublicationDetail-class | PublicationDetail, This class contains a Publication Record
PublicationResult-class | PiublicationResult, This class contains a list of publication for specific Query
search.DatasetsSummary | search.DatasetsSummary
Similar-class | Similar, This class contains the information of one particuar dataset in OmicsDI
StatRecord-class | StatRecord, This class contains the information of statistics records
Term-class | Term, This class contains the information of a Term