Package: CALDER
Type: Package
Title: CALDER: a Hi-C analysis tool for inferring non-linear
        hierarchical organization of the 3D chromosome
Version: 2.0
Date: 2022-05-10
Author: Yuanlong LIU
Maintainer: Who to complain to <yliueagle@googlemail.com>
Description: CALDER is a Hi-C analysis tool that allows: (1) compute chromatin domains from whole chromosome contacts; (2) derive their non-linear hierarchical organization and obtain sub-compartments; (3) compute nested sub-domains within each chromatin domain from short-range contacts
LinkingTo: Rcpp, RcppArmadillo
Authors@R: c(
    person(given = "Yuanlong",
           family = "LIU",
           role = c("aut", "cre"),
           email = "yliueagle@googlemail.com"))
URL: https://github.com/CSOgroup/CALDER2
BugReports: https://github.com/CSOgroup/CALDER2/issues
License: MIT
Encoding: UTF-8
Depends: R (>= 3.5.2)
Imports: R.utils (>= 2.9.0), doParallel (>= 1.0.15), ape (>= 5.3),
        dendextend (>= 1.12.0), fitdistrplus (>= 1.0.14), igraph (>=
        1.2.4.1), Matrix (>= 1.2.17), rARPACK (>= 0.11.0), factoextra
        (>= 1.0.5), maptools (>= 0.9.5), data.table (>= 1.12.2), fields
        (>= 9.8.3), GenomicRanges (>= 1.36.0), strawr (>= 0.0.9), rhdf5
        (>= 2.28.0), ggplot2 (>= 3.3.5)
RoxygenNote: 7.1.2
Built: R 4.1.3; x86_64-conda-linux-gnu; 2022-10-12 09:34:58 UTC; unix
