Package: bcbioRNASeq
Title: bcbio RNA-Seq
Description: Toolkit for bcbio RNA-seq analysis.
Version: 0.3.37
Date: 2020-09-15
Authors@R: c(
    person(
        given = "Michael",
        family = "Steinbaugh",
        email = "mike@steinbaugh.com",
        role = c("aut", "cre"),
        comment = c(ORCID = "0000-0002-2403-2221")
    ),
    person(
        given = "Lorena",
        family = "Pantano",
        email = "lorena.pantano@gmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0002-3859-3249")
    ),
    person(
        given = "Rory",
        family = "Kirchner",
        email = "roryk@alum.mit.edu",
        role = "aut",
        comment = c(ORCID = "0000-0003-4814-5885")
    ),
    person(
        given = "Victor",
        family = "Barrera",
        email = "barrera.vic@gmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0003-0590-4634")
    ),
    person(
        given = "Brad",
        family = "Chapman",
        email = "chapmanb@fastmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0002-3026-1856")
    ),
    person(
        given = "Mary",
        family = "Piper",
        email = "mary.piper@gmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0003-2699-3840")
    ),
    person(
        given = "Meeta",
        family = "Mistry",
        email = "meeta.mistry@gmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0002-5830-9479")
    ),
    person(
        given = "Radhika",
        family = "Khetani",
        email = "rkhetani@hsph.harvard.edu",
        role = "aut",
        comment = c(ORCID = "0000-0003-2430-2970")
    ),
    person(
        given = "Kayleigh",
        family = "Rutherford",
        email = "kayrut1@gmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0001-9699-2363")
    ),
    person(
        given = "Oliver",
        family = "Hofmann",
        email = "ohofmann72@gmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0002-7738-1513")
    ),
    person(
        given = "John",
        family = "Hutchinson",
        email = "jnhutchinson@gmail.com",
        role = "aut",
        comment = c(ORCID = "0000-0002-7804-7576")
    ),
    person(
        given = "Shannan",
        family = "Ho Sui",
        email = "shosui@hsph.harvard.edu",
        role = "aut",
        comment = c(ORCID = "0000-0002-6191-4709")
    ),
    person(
        given = "Harvard Chan Bioinformatics Core",
        email = "bioinformatics@hsph.harvard.edu",
        role = c("cph", "fnd")
    ))
URL: https://bioinformatics.sph.harvard.edu/bcbioRNASeq/,
        https://github.com/hbc/bcbioRNASeq/
BugReports: https://github.com/hbc/bcbioRNASeq/issues/
License: GPL-3
Encoding: UTF-8
LazyData: false
Depends: R (>= 4.0), SummarizedExperiment (>= 1.18), basejump (>=
        0.12.14)
Imports: BiocGenerics, DESeq2 (>= 1.28), S4Vectors, acidgenerics (>=
        0.3.11), acidplots (>= 0.2.35), bcbioBase (>= 0.6.14), cli (>=
        2.0), cowplot (>= 1.0), edgeR (>= 3.30), ggplot2 (>= 3.3),
        goalie (>= 0.4.8), methods, rlang (>= 0.4), scales (>= 1.1),
        sessioninfo (>= 1.1), tximport (>= 1.16), utils
Suggests: BiocStyle, DEGreport, DESeqAnalysis, DOSE,
        EnsDb.Hsapiens.v75, clusterProfiler, hexbin, knitr,
        org.Hs.eg.db, org.Mm.eg.db, pathview, rhdf5, rmarkdown,
        roxygen2, testthat, tidyverse, viridis, vsn
Remotes: acidgenomics/DESeqAnalysis, acidgenomics/acidgenerics,
        acidgenomics/acidplots, acidgenomics/basejump,
        acidgenomics/goalie, hbc/bcbioBase
biocViews: DataImport, DataRepresentation, DifferentialExpression,
        GeneExpression, QualityControl, ReportWriting, RNASeq,
        Transcription, Visualization
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
VignetteBuilder: knitr
Author: Michael Steinbaugh [aut, cre] (<https://orcid.org/0000-0002-2403-2221>),
  Lorena Pantano [aut] (<https://orcid.org/0000-0002-3859-3249>),
  Rory Kirchner [aut] (<https://orcid.org/0000-0003-4814-5885>),
  Victor Barrera [aut] (<https://orcid.org/0000-0003-0590-4634>),
  Brad Chapman [aut] (<https://orcid.org/0000-0002-3026-1856>),
  Mary Piper [aut] (<https://orcid.org/0000-0003-2699-3840>),
  Meeta Mistry [aut] (<https://orcid.org/0000-0002-5830-9479>),
  Radhika Khetani [aut] (<https://orcid.org/0000-0003-2430-2970>),
  Kayleigh Rutherford [aut] (<https://orcid.org/0000-0001-9699-2363>),
  Oliver Hofmann [aut] (<https://orcid.org/0000-0002-7738-1513>),
  John Hutchinson [aut] (<https://orcid.org/0000-0002-7804-7576>),
  Shannan Ho Sui [aut] (<https://orcid.org/0000-0002-6191-4709>),
  Harvard Chan Bioinformatics Core [cph, fnd]
Maintainer: Michael Steinbaugh <mike@steinbaugh.com>
Built: R 4.0.2; ; 2020-09-15 16:29:17 UTC; unix
