AcidGSEA-package	AcidGSEA-package
AcidGSEA	AcidGSEA-package
AcidGseaTestsUrl	AcidGseaTestsUrl
alphaThreshold	alphaThreshold
alphaThreshold,FgseaList-method	alphaThreshold
alphaThreshold<-	alphaThreshold
alphaThreshold<-,FgseaList,numeric-method	alphaThreshold
collectionNames	collectionNames
collectionNames,FgseaList-method	collectionNames
collectionNames<-	collectionNames
collectionNames<-,FgseaList,character-method	collectionNames
combine	combine
combine,FgseaList,FgseaList-method	combine
contrastNames	contrastNames
contrastNames,FgseaList-method	contrastNames
contrastNames<-	contrastNames
contrastNames<-,FgseaList,character-method	contrastNames
convertToHuman	convertToHuman
convertToHuman,DESeqAnalysis-method	convertToHuman
enrichedGeneSets	enrichedGeneSets
enrichedGeneSets,FgseaList-method	enrichedGeneSets
export	export
export,FgseaList,character-method	export
fgsea	fgsea
FgseaList	FgseaList
FgseaList,DESeqAnalysis-method	FgseaList
FgseaList,DESeqResults-method	FgseaList
FgseaList,RankedList-method	FgseaList
FgseaList-class	FgseaList-class
geneSet	geneSet
geneSet,FgseaList-method	geneSet
geneSetNames	geneSetNames
geneSetNames,FgseaList-method	geneSetNames
geneSetResults	geneSetResults
geneSetResults,FgseaList-method	geneSetResults
GeneToSymbol	GeneToSymbol
GeneToSymbol,FgseaList-method	GeneToSymbol
leadingEdge	leadingEdge
leadingEdge,FgseaList-method	leadingEdge
markdownTables	markdownTables
markdownTables,FgseaList-method	markdownTables
nesThreshold	nesThreshold
nesThreshold,FgseaList-method	nesThreshold
nesThreshold<-	nesThreshold
nesThreshold<-,FgseaList,numeric-method	nesThreshold
params	params
plotEnrichedGeneSets	plotEnrichedGeneSets
plotEnrichedGeneSets,FgseaList-method	plotEnrichedGeneSets
plotEnrichedUpset	plotEnrichedUpset
plotEnrichedUpset,FgseaList-method	plotEnrichedUpset
plotGeneSet	plotGeneSet
plotGeneSet,FgseaList-method	plotGeneSet
plotHeatmap	plotHeatmap
plotHeatmap,FgseaList-method	plotHeatmap
plotLfc	plotLfc
plotLfc,FgseaList-method	plotLfc
plotNes	plotNes
plotNes,FgseaList-method	plotNes
prepareGeneSetFiles	prepareGeneSetFiles
RankedList	RankedList
RankedList,DESeqAnalysis-method	RankedList
RankedList,DESeqResults-method	RankedList
RankedList,FgseaList-method	RankedList
RankedList-class	RankedList-class
results	results
results,FgseaList-method	results
show	show
show,FgseaList-method	show
updateObject	updateObject
updateObject,FgseaList-method	updateObject
