FGSEAList               Parameterized fast gene set enrichment analysis
                        (GSEA)
FGSEAList-class         Fast GSEA list
Gene2Symbol             Gene-to-symbol mappings
RankedList              Ranked list of genes
RankedList-class        Ranked list of genes
alphaThreshold          Alpha threshold
collectionNames         Gene set collection names
combine                 Combine multiple objects
contrastNames           Contrast names
convertToHuman          Convert data set by mapping to human orthologs
enrichedGeneSets        Enriched gene sets
export                  Export
fgsea                   FGSEAList example data
geneSet                 Gene set
geneSetNames            Gene set names
geneSetResults          Gene set results
leadingEdge             Leading edge genes
markdownTables          Markdown tables
nesThreshold            Normalized enrichment score (NES) threshold
plotEnrichedGeneSets    Plot enriched gene sets
plotEnrichedUpset       UpSet plot of directional enriched pathway
                        intersections across contrasts
plotGeneSet             Plot gene set enrichment
plotHeatmap             Heatmap
plotLFC                 Plot log2 fold change distributions
plotNES                 Plot normalized enrichment score
prepareGeneSetFiles     Prepare gene set files
results                 Results
show                    Show an object
updateObject            Update object
