AcidGSEATestsURL	AcidGSEATestsURL
alphaThreshold	alphaThreshold
alphaThreshold,FGSEAList-method	alphaThreshold
alphaThreshold<-	alphaThreshold
alphaThreshold<-,FGSEAList,numeric-method	alphaThreshold
collectionNames	collectionNames
collectionNames,FGSEAList-method	collectionNames
collectionNames<-	collectionNames
collectionNames<-,FGSEAList,character-method	collectionNames
combine	combine
combine,FGSEAList,FGSEAList-method	combine
contrastNames	contrastNames
contrastNames,FGSEAList-method	contrastNames
contrastNames<-	contrastNames
contrastNames<-,FGSEAList,character-method	contrastNames
convertToHuman	convertToHuman
convertToHuman,DESeqAnalysis-method	convertToHuman
enrichedGeneSets	enrichedGeneSets
enrichedGeneSets,FGSEAList-method	enrichedGeneSets
export	export
export,FGSEAList,character,missing-method	export
fgsea	fgsea
FGSEAList	FGSEAList
FGSEAList,DESeqAnalysis-method	FGSEAList
FGSEAList,DESeqResults-method	FGSEAList
FGSEAList,RankedList-method	FGSEAList
FGSEAList-class	FGSEAList-class
Gene2Symbol	Gene2Symbol
Gene2Symbol,FGSEAList-method	Gene2Symbol
geneSet	geneSet
geneSet,FGSEAList-method	geneSet
geneSetNames	geneSetNames
geneSetNames,FGSEAList-method	geneSetNames
geneSetResults	geneSetResults
geneSetResults,FGSEAList-method	geneSetResults
leadingEdge	leadingEdge
leadingEdge,FGSEAList-method	leadingEdge
markdownTables	markdownTables
markdownTables,FGSEAList-method	markdownTables
nesThreshold	nesThreshold
nesThreshold,FGSEAList-method	nesThreshold
nesThreshold<-	nesThreshold
nesThreshold<-,FGSEAList,numeric-method	nesThreshold
params	params
plotEnrichedGeneSets	plotEnrichedGeneSets
plotEnrichedGeneSets,FGSEAList-method	plotEnrichedGeneSets
plotEnrichedUpset	plotEnrichedUpset
plotEnrichedUpset,FGSEAList-method	plotEnrichedUpset
plotGeneSet	plotGeneSet
plotGeneSet,FGSEAList-method	plotGeneSet
plotHeatmap	plotHeatmap
plotHeatmap,FGSEAList-method	plotHeatmap
plotLFC	plotLFC
plotLFC,FGSEAList-method	plotLFC
plotNES	plotNES
plotNES,FGSEAList-method	plotNES
prepareGeneSetFiles	prepareGeneSetFiles
RankedList	RankedList
RankedList,DESeqAnalysis-method	RankedList
RankedList,DESeqResults-method	RankedList
RankedList,FGSEAList-method	RankedList
RankedList-class	RankedList-class
results	results
results,FGSEAList-method	results
show	show
show,FGSEAList-method	show
updateObject	updateObject
updateObject,FGSEAList-method	updateObject
