AcidGenomes-package	AcidGenomes-package
AcidGenomes	AcidGenomes-package
AcidGenomesTestsUrl	AcidGenomesTestsUrl
currentEnsemblGenomeBuild	currentGenomeBuild
currentEnsemblVersion	currentGenomeVersion
currentFlybaseVersion	currentGenomeVersion
currentGencodeGenomeBuild	currentGenomeBuild
currentGencodeVersion	currentGenomeVersion
currentGenomeBuild	currentGenomeBuild
currentGenomeVersion	currentGenomeVersion
currentRefseqGenomeBuild	currentGenomeBuild
currentRefseqVersion	currentGenomeVersion
currentUcscGenomeBuild	currentGenomeBuild
currentWormbaseVersion	currentGenomeVersion
detectOrganism	detectOrganism
downloadEnsemblGenome	downloadEnsemblGenome
downloadGencodeGenome	downloadGencodeGenome
downloadRefseqGenome	downloadRefseqGenome
downloadUcscGenome	downloadUcscGenome
emptyRanges	emptyRanges
EnsemblGenes	EnsemblGenes
EnsemblGenes-class	EnsemblGenes-class
EnsemblToNcbi	EnsemblToNcbi
EnsemblToNcbi,character-method	EnsemblToNcbi
EnsemblToNcbi,EnsemblGenes-method	EnsemblToNcbi
EnsemblToNcbi,GencodeGenes-method	EnsemblToNcbi
EnsemblToNcbi,Hgnc-method	EnsemblToNcbi
EnsemblToNcbi,Mgi-method	EnsemblToNcbi
EnsemblToNcbi-class	EnsemblToNcbi-class
EnsemblTranscripts-class	EnsemblTranscripts-class
export	export
export,TxToGene,character-method	export
FlybaseGenes-class	FlybaseGenes-class
FlybaseTranscripts-class	FlybaseTranscripts-class
GencodeGenes-class	GencodeGenes-class
gencodeReleaseHistory	gencodeReleaseHistory
GencodeTranscripts-class	GencodeTranscripts-class
GeneToSymbol	GeneToSymbol
GeneToSymbol,DFrame-method	GeneToSymbol
GeneToSymbol,GRanges-method	GeneToSymbol
GeneToSymbol-class	GeneToSymbol-class
Hgnc	Hgnc
Hgnc-class	Hgnc-class
importTxToGene	importTxToGene
JaxHumanToMouse	JaxHumanToMouse
JaxHumanToMouse-class	JaxHumanToMouse-class
makeEnsDbFromGff	makeEnsDbFromGff
makeGeneToSymbol	makeGeneToSymbol
makeGeneToSymbolFromEnsDb	makeGeneToSymbol
makeGeneToSymbolFromEnsembl	makeGeneToSymbol
makeGeneToSymbolFromGff	makeGeneToSymbol
makeGRangesFromEnsDb	makeGRangesFromEnsembl
makeGRangesFromEnsembl	makeGRangesFromEnsembl
makeGRangesFromGff	makeGRangesFromGff
makeProteinToGene	makeProteinToGene
makeProteinToGeneFromEnsembl	makeProteinToGene
makeTxToGene	makeTxToGene
makeTxToGeneFromEnsDb	makeTxToGene
makeTxToGeneFromEnsembl	makeTxToGene
makeTxToGeneFromFasta	makeTxToGeneFromFasta
makeTxToGeneFromGff	makeTxToGene
mapEnsemblReleaseToUrl	mapEnsemblReleaseToUrl
mapGencodeToEnsembl	mapGencodeToEnsembl
mapGeneNamesToEnsembl	mapGeneNamesToEnsembl
mapGeneNamesToHgnc	mapGeneNamesToHgnc
mapGeneNamesToNcbi	mapGeneNamesToNcbi
mapHumanOrthologs	mapHumanOrthologs
Mgi	Mgi
Mgi-class	Mgi-class
NcbiGeneHistory	NcbiGeneHistory
NcbiGeneHistory-class	NcbiGeneHistory-class
NcbiGeneInfo	NcbiGeneInfo
NcbiGeneInfo-class	NcbiGeneInfo-class
NcbiToEnsembl	NcbiToEnsembl
NcbiToEnsembl,Hgnc-method	NcbiToEnsembl
NcbiToEnsembl,integer-method	NcbiToEnsembl
NcbiToEnsembl,Mgi-method	NcbiToEnsembl
NcbiToEnsembl-class	NcbiToEnsembl-class
organism	organism
organism,Annotated-method	organism
organism,data.frame-method	organism
organism,DFrame-method	organism
organism,GRanges-method	organism
organism,Matrix-method	organism
organism,matrix-method	organism
organism<-	organism
organism<-,Annotated-method	organism
params	params
ProteinToGene-class	ProteinToGene-class
RefseqGenes-class	RefseqGenes-class
RefseqTranscripts-class	RefseqTranscripts-class
show	show
show,EnsemblGenes-method	show
show,EnsemblTranscripts-method	show
show,FlybaseGenes-method	show
show,FlybaseTranscripts-method	show
show,GencodeGenes-method	show
show,GencodeTranscripts-method	show
show,RefseqGenes-method	show
show,RefseqTranscripts-method	show
show,UcscGenes-method	show
show,UcscTranscripts-method	show
show,WormbaseGenes-method	show
show,WormbaseTranscripts-method	show
stripGeneVersions	stripGeneVersions
stripGeneVersions,character-method	stripGeneVersions
stripGeneVersions,integer-method	stripGeneVersions
stripGeneVersions,Matrix-method	stripGeneVersions
stripGeneVersions,matrix-method	stripGeneVersions
stripTranscriptVersions	stripTranscriptVersions
stripTranscriptVersions,character-method	stripTranscriptVersions
stripTranscriptVersions,integer-method	stripTranscriptVersions
stripTranscriptVersions,Matrix-method	stripTranscriptVersions
stripTranscriptVersions,matrix-method	stripTranscriptVersions
summary	summary
summary,GeneToSymbol-method	summary
summary,TxToGene-method	summary
TxToGene	TxToGene
TxToGene,data.frame-method	TxToGene
TxToGene,DFrame-method	TxToGene
TxToGene,GRanges-method	TxToGene
TxToGene,GRangesList-method	TxToGene
TxToGene,matrix-method	TxToGene
TxToGene-class	TxToGene-class
UcscGenes-class	UcscGenes-class
UcscTranscripts-class	UcscTranscripts-class
updateObject	updateObject
updateObject,EnsemblGenes-method	updateObject
updateObject,EnsemblTranscripts-method	updateObject
updateObject,GencodeGenes-method	updateObject
updateObject,GencodeTranscripts-method	updateObject
WormbaseGenes-class	WormbaseGenes-class
WormbaseTranscripts-class	WormbaseTranscripts-class
