From 4fe9c4b1d7628012fc6f4edce6b15ddb62f020df Mon Sep 17 00:00:00 2001
From: Alexey Gurevich <alexeigurevich@gmail.com>
Date: Fri, 29 Dec 2017 18:14:15 +0300
Subject: [PATCH] Temp: disable and exclude genemark from installation

---
 MANIFEST.in            | 2 ++
 quast_libs/genemark.py | 2 +-
 setup.py               | 6 +++---
 3 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/MANIFEST.in b/MANIFEST.in
index 9e46ac7..045fade 100644
--- a/MANIFEST.in
+++ b/MANIFEST.in
@@ -20,6 +20,8 @@ global-exclude make.*
 
 recursive-exclude quast_libs/blast *
 recursive-exclude quast_libs/manta/build *
+recursive-exclude quast_libs/genemark *
+recursive-exclude quast_libs/genemark-es *
 
 # include this file, to ensure we can recreate source distributions
 include MANIFEST.in
diff --git a/quast_libs/genemark.py b/quast_libs/genemark.py
index b560ecd..dbe5447 100644
--- a/quast_libs/genemark.py
+++ b/quast_libs/genemark.py
@@ -21,7 +21,7 @@ from quast_libs.qutils import is_python2
 
 logger = get_logger(qconfig.LOGGER_DEFAULT_NAME)
 
-LICENSE_LIMITATIONS_MODE = False
+LICENSE_LIMITATIONS_MODE = True
 OUTPUT_FASTA = False  # whether output only .gff or with corresponding .fasta files
 
 
diff --git a/setup.py b/setup.py
index 3b51479..ff4f83f 100755
--- a/setup.py
+++ b/setup.py
@@ -225,9 +225,9 @@ The tool accepts multiple assemblies, thus is suitable for comparison.''',
             ] +
             find_package_files('html_saver') +
             nucmer_files +
-            find_package_files('genemark/' + qconfig.platform_name) +
-            find_package_files('genemark-es/' + qconfig.platform_name) +
-            find_package_files('genemark-es/lib') +
+            # find_package_files('genemark/' + qconfig.platform_name) +
+            # find_package_files('genemark-es/' + qconfig.platform_name) +
+            # find_package_files('genemark-es/lib') +
             find_package_files('glimmer') +
             find_package_files('gage') +
             bwa_files +
-- 
2.7.2

