db_base_dir: /path/to/test_dbs
general:
  job_name: Test
  job_comment: 'none'
input:
  search_result: /path/to/test_job/input/mpa_multiple_sample_groups.csv
  report_style: /home/jules/prophane/styles/mpa_server_multisample.yaml
  fastas:
    - /path/to/test_job/input/target_db.fasta
  taxmaps: []
output_dir: '/path/to/test_job/'
tasks:
- db_type: uniprot_sp
  db_version: newest
  type: taxonomic
  params: {evalue: 0.001}
  shortname: Swissprot Taxonomic Annotation
  prog: diamond blastp
decoy_regex: 'DECOY$'
quant_method: max_nsaf
sample_groups:
  ABC: [ABC-08.mgf, ABC-11.mgf, ABC-16.mgf]
  C1: [C1-08.mgf, C1-11.mgf, C1-16.mgf]
lca:
  method: lca
  threshold: 1
