# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.2.1 (June 2018); http://hmmer.org/
# Copyright (C) 2018 Howard Hughes Medical Institute.
# Freely distributed under the BSD open source license.
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file:                  /tmp/pytest-of-hennings/pytest-0/test_full_analysis_and_file_pr0/test_dbs/tigrfams/15.0/processed/TIGRFAMs_15.0_HMM.LIB.unzipped_hmmlib-latest
# target sequence database:        seqs/all.faa
# output directed to file:         tasks/fun_annot_by_hmmer-latest_on_tigrfams.v15.0.task4.log
# per-seq hits tabular output:     tasks/fun_annot_by_hmmer-latest_on_tigrfams.v15.0.task4.result
# show alignments in output:       no
# max ASCII text line length:      unlimited
# model-specific thresholding:     TC cutoffs
# number of worker threads:        3
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       TIGR00165  [M=70]
Accession:   TIGR00165
Description: S18: ribosomal protein bS18
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.5e-34  108.0   0.8    1.9e-34  107.7   0.8    1.0  1  KZK33282.1      
    1.5e-34  108.0   0.8    1.9e-34  107.7   0.8    1.0  1  NP_268346.1     
    1.5e-34  108.0   0.8    1.9e-34  107.7   0.8    1.0  1  WP_003131952.1  


Domain annotation for each sequence:
>> KZK33282.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.8   4.1e-35   1.9e-34       2      69 ..      10      77 ..       9      78 .. 0.92

>> NP_268346.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.8   4.1e-35   1.9e-34       2      69 ..      10      77 ..       9      78 .. 0.92

>> WP_003131952.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   0.8   4.1e-35   1.9e-34       2      69 ..      10      77 ..       9      78 .. 0.92



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                            1  (70 nodes)
Target sequences:                         14  (4101 residues searched)
Passed MSV filter:                         3  (0.214286); expected 0.3 (0.02)
Passed bias filter:                        3  (0.214286); expected 0.3 (0.02)
Passed Vit filter:                         3  (0.214286); expected 0.0 (0.001)
Passed Fwd filter:                         3  (0.214286); expected 0.0 (1e-05)
Initial search space (Z):                 14  [actual number of targets]
Domain search space  (domZ):               3  [number of targets reported over threshold]
# CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00
# Mc/sec: 344.34
//
Query:       TIGR00838  [M=455]
Accession:   TIGR00838
Description: argH: argininosuccinate lyase
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
   4.4e-170  556.3   0.0     5e-170  556.1   0.0    1.0  1  PKC80086.1  


Domain annotation for each sequence:
>> PKC80086.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  556.1   0.0  3.6e-171    5e-170       1     454 [.      10     468 ..      10     469 .. 0.97



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                            1  (455 nodes)
Target sequences:                         14  (4101 residues searched)
Passed MSV filter:                         1  (0.0714286); expected 0.3 (0.02)
Passed bias filter:                        1  (0.0714286); expected 0.3 (0.02)
Passed Vit filter:                         1  (0.0714286); expected 0.0 (0.001)
Passed Fwd filter:                         1  (0.0714286); expected 0.0 (1e-05)
Initial search space (Z):                 14  [actual number of targets]
Domain search space  (domZ):               1  [number of targets reported over threshold]
# CPU time: 0.00u 0.00s 00:00:00.00 Elapsed: 00:00:00.00
# Mc/sec: 332.44
//
[ok]
