long_total_length.txt
polap.log
ptdna-ptgaul.fa
ptdna-reference.fa
short_expected_genome_size.txt
short_total_length.txt
# msbwt/comp_msbwt.npy
timing/timing-check-1-simple-polish.txt
timing/timing-check-1-subsample-polish.txt
timing/timing-compare-1.txt
timing/timing-infer-1-simple-polish.txt
timing/timing-infer-1-subsample-polish.txt
0/disassemble
0/disassemble/compare-1/params.txt
0/disassemble/compare-1/pt.simple-polishing.1.fa
0/disassemble/compare-1/1/index.txt
0/disassemble/compare-1/1/params.txt
0/disassemble/compare-1/1/selected-index.txt
0/disassemble/compare-1/1/summary1-ordered.pdf
0/disassemble/compare-1/1/summary1-ordered.txt
0/disassemble/compare-1/1/summary1.md
0/disassemble/compare-1/1/summary1.txt
0/disassemble/compare-1/1/summary2.txt
0/disassemble/compare-1/1/0/timing-cflye.txt
0/disassemble/compare-1/1/1/30-contigger/graph_final.gfa
0/disassemble/compare-1/1/1/52-mtdna
0/disassemble/compare-1/1/1/assembly_graph.gfa
0/disassemble/compare-1/1/1/timing-cflye.txt
0/disassemble/compare-1/2/index.txt
0/disassemble/compare-1/2/params.txt
0/disassemble/compare-1/2/selected-index.txt
0/disassemble/compare-1/2/summary1-ordered.pdf
0/disassemble/compare-1/2/summary1-ordered.txt
0/disassemble/compare-1/2/summary1.md
0/disassemble/compare-1/2/summary1.txt
0/disassemble/compare-1/2/summary2.txt
0/disassemble/compare-1/2/0/assembly_graph.gfa
0/disassemble/compare-1/2/0/timing-cflye.txt
0/disassemble/infer-1/params.txt
0/disassemble/infer-1/pt.simple-polishing.1.fa
0/disassemble/infer-1/pt.simple-polishing.reference.aligned.1.fa
0/disassemble/infer-1/pt.subsample-polishing.1.fa
0/disassemble/infer-1/pt.subsample-polishing.reference.aligned.1.fa
0/disassemble/infer-1/1/index.txt
0/disassemble/infer-1/1/params.txt
0/disassemble/infer-1/1/selected-index.txt
0/disassemble/infer-1/1/summary1-ordered.txt
0/disassemble/infer-1/1/summary1.md
0/disassemble/infer-1/1/summary1.txt
0/disassemble/infer-1/1/summary2.txt
0/disassemble/infer-1/1/1/30-contigger/graph_final.fa
0/disassemble/infer-1/1/1/timing-cflye.txt
0/disassemble/infer-1/2/index.txt
0/disassemble/infer-1/2/params.txt
0/disassemble/infer-1/2/selected-index.txt
0/disassemble/infer-1/2/summary1-ordered.pdf
0/disassemble/infer-1/2/summary1-ordered.txt
0/disassemble/infer-1/2/summary1.md
0/disassemble/infer-1/2/summary1.txt
0/disassemble/infer-1/2/summary2.txt
0/disassemble/infer-1/2/0/assembly_graph.gfa
0/disassemble/infer-1/2/0/timing-cflye.txt
0/disassemble/infer-1/3-check/index.short.txt
0/disassemble/infer-1/3-check/selected-index.txt
0/disassemble/infer-1/3-check/summary1-ordered.pdf
0/disassemble/infer-1/3-check/summary1-ordered.txt
0/disassemble/infer-1/3-check/summary1.md
0/disassemble/infer-1/3-check/summary1.txt
0/disassemble/infer-1/3-check/0/timing-fmlrc.txt
0/disassemble/infer-1/3-check/0/timing-msbwt.txt
0/disassemble/infer-1/3-infer/index.short.txt
0/disassemble/infer-1/3-infer/selected-index.txt
0/disassemble/infer-1/3-infer/summary1-ordered.pdf
0/disassemble/infer-1/3-infer/summary1-ordered.txt
0/disassemble/infer-1/3-infer/summary1.md
0/disassemble/infer-1/3-infer/summary1.txt
0/disassemble/infer-1/3-infer/0/timing-fmlrc.txt
0/disassemble/infer-1/3-infer/0/timing-msbwt.txt
1/disassemble
1/disassemble/compare-1/params.txt
1/disassemble/compare-1/pt.simple-polishing.1.fa
1/disassemble/compare-1/1/index.txt
1/disassemble/compare-1/1/params.txt
1/disassemble/compare-1/1/selected-index.txt
1/disassemble/compare-1/1/summary1-ordered.pdf
1/disassemble/compare-1/1/summary1-ordered.txt
1/disassemble/compare-1/1/summary1.md
1/disassemble/compare-1/1/summary1.txt
1/disassemble/compare-1/1/summary2.txt
1/disassemble/compare-1/1/0/timing-cflye.txt
1/disassemble/compare-1/1/1/30-contigger/graph_final.gfa
1/disassemble/compare-1/1/1/52-mtdna
1/disassemble/compare-1/1/1/assembly_graph.gfa
1/disassemble/compare-1/1/1/timing-cflye.txt
1/disassemble/compare-1/2/index.txt
1/disassemble/compare-1/2/params.txt
1/disassemble/compare-1/2/selected-index.txt
1/disassemble/compare-1/2/summary1-ordered.pdf
1/disassemble/compare-1/2/summary1-ordered.txt
1/disassemble/compare-1/2/summary1.md
1/disassemble/compare-1/2/summary1.txt
1/disassemble/compare-1/2/summary2.txt
1/disassemble/compare-1/2/0/assembly_graph.gfa
1/disassemble/compare-1/2/0/timing-cflye.txt
1/disassemble/infer-1/params.txt
1/disassemble/infer-1/pt.simple-polishing.1.fa
1/disassemble/infer-1/pt.simple-polishing.reference.aligned.1.fa
1/disassemble/infer-1/pt.subsample-polishing.1.fa
1/disassemble/infer-1/pt.subsample-polishing.reference.aligned.1.fa
1/disassemble/infer-1/1/index.txt
1/disassemble/infer-1/1/params.txt
1/disassemble/infer-1/1/selected-index.txt
1/disassemble/infer-1/1/summary1-ordered.txt
1/disassemble/infer-1/1/summary1.md
1/disassemble/infer-1/1/summary1.txt
1/disassemble/infer-1/1/summary2.txt
1/disassemble/infer-1/1/1/30-contigger/graph_final.fa
1/disassemble/infer-1/1/1/timing-cflye.txt
1/disassemble/infer-1/2/index.txt
1/disassemble/infer-1/2/params.txt
1/disassemble/infer-1/2/selected-index.txt
1/disassemble/infer-1/2/summary1-ordered.pdf
1/disassemble/infer-1/2/summary1-ordered.txt
1/disassemble/infer-1/2/summary1.md
1/disassemble/infer-1/2/summary1.txt
1/disassemble/infer-1/2/summary2.txt
1/disassemble/infer-1/2/0/assembly_graph.gfa
1/disassemble/infer-1/2/0/timing-cflye.txt
1/disassemble/infer-1/3-check/index.short.txt
1/disassemble/infer-1/3-check/selected-index.txt
1/disassemble/infer-1/3-check/summary1-ordered.pdf
1/disassemble/infer-1/3-check/summary1-ordered.txt
1/disassemble/infer-1/3-check/summary1.md
1/disassemble/infer-1/3-check/summary1.txt
1/disassemble/infer-1/3-check/0/timing-fmlrc.txt
1/disassemble/infer-1/3-check/0/timing-msbwt.txt
1/disassemble/infer-1/3-infer/index.short.txt
1/disassemble/infer-1/3-infer/selected-index.txt
1/disassemble/infer-1/3-infer/summary1-ordered.pdf
1/disassemble/infer-1/3-infer/summary1-ordered.txt
1/disassemble/infer-1/3-infer/summary1.md
1/disassemble/infer-1/3-infer/summary1.txt
1/disassemble/infer-1/3-infer/0/timing-fmlrc.txt
1/disassemble/infer-1/3-infer/0/timing-msbwt.txt
