### ViewSam

USAGE: ViewSam [options]

Prints a SAM or BAM file to the screen.

Option | Description
--- | ---
INPUT=File | The SAM or BAM file to view. Required.
ALIGNMENT_STATUS=AlignmentStatus | Print out all reads, just the aligned reads or just the unaligned reads. Default value: All. This option can be set to 'null' to clear the default value. Possible values: {Aligned, Unaligned, All}
PF_STATUS=PfStatus | Print out all reads, just the PF reads or just the non-PF reads. Default value: All. This option can be set to 'null' to clear the default value. Possible values: {PF, NonPF, All}