{
  "channels": [
    "file:///opt/host-conda-bld",
    "https://conda.anaconda.org/conda-forge",
    "https://conda.anaconda.org/bioconda",
    "file:///opt/host-conda-bld",
    "https://conda.anaconda.org/conda-forge",
    "https://conda.anaconda.org/bioconda"
  ],
  "conda_build_version": "24.5.1",
  "conda_version": "24.5.0",
  "description": "PIA allows you to inspect the results of common proteomics spectrum identification\nsearch engines, combine them seamlessly and conduct statistical analyses. The main\nfocus of PIA lays on the integrated inference algorithms, i.e. concluding the proteins\nfrom a set of identified spectra. But it also allows you to inspect your peptide\nspectrum matches, calculate FDR values across different search engine results and\nvisualize the correspondence between PSMs, peptides and proteins.\n",
  "env_vars": {
    "CIO_TEST": "<not set>"
  },
  "extra": {
    "copy_test_source_files": true,
    "final": true,
    "identifiers": [
      "biotools:pia",
      "doi:10.1021/acs.jproteome.5b00121"
    ],
    "notes": "PIA is Java program that comes with a custom wrapper shell script.\nThis shell wrapper is called \"pia\" and is on $PATH by default. By default\n\"-Xms2g -Xmx4g\" is set in the wrapper. If you want to overwrite it you can\nspecify these values directly after your binaries. If you have _JAVA_OPTIONS\nset globally this will take precedence.\nFor example run it with \"pia -Xms512m -Xmx2g\" for a lower memory footprint.\n"
  },
  "home": "https://github.com/medbioinf/pia",
  "identifiers": [],
  "keywords": [],
  "license": "BSD-3-Clause",
  "license_file": "LICENSE",
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  "summary": "PIA is a toolbox for MS based protein inference and identification analysis.",
  "tags": []
}