%btwn%	grapes-btwn-grapes
%btwn.inc%	grapes-btwn.inc-grapes
%intr%	grapes-intr-grapes
%withnames%	grapes-withnames-grapes
add.below.LOD	add.below.LOD
add.fx.to.matrix	add.fx.to.matrix
add.sig.descs	add.sig.descs
adjust.db	adjust.db
alt.multi.enrich	alt.multi.enrich
b.scorer	b.scorer
build.fx.matrix	build.fx.matrix
calc.alpha.power	calc.alpha.power
calc.ess	calc.ess
capwords	capwords
check.process.metadata	check.process.metadata
clean.pheno	clean.pheno
cluster.load.pkg	cluster.load.pkg
colnorm	colnorm
count.each	count.each
divide.samples	divide.samples
do.clust.plot	do.clust.plot
do.fisher	do.fisher
dummy.g2s	dummy.g2s
dummy.trees	dummy.trees
equiv_test	equiv_test
fastread	fastread
fdr.bh	fdr.bh
fdr.by	fdr.by
first.element.at.depth	first.element.at.depth
fit.beta.list	fit.beta.list
fix.tree	fix.tree
gene.annot	gene.annot
generate.fake.abd.meta	generate.fake.abd.meta
generate.test.pzdb	generate.test.pzdb
geommean	geommean
get.pheno.plotting.scales	get.pheno.plotting.scales
get.pheno.plotting.scales.prevalence	get.pheno.plotting.scales.prevalence
get.pheno.plotting.scales.specificity	get.pheno.plotting.scales.specificity
get.sample.names	NameFaker
get.species.names	NameFaker
get.top.N	get.top.N
get.vsearch.results	get.vsearch.results
gg.cont.tree	gg.cont.tree
grepv	grepv
harmonize.abd.meta	harmonize.abd.meta
import.pz.db	import.pz.db
indiv.enr	indiv.enr
install.data.figshare	install.data.figshare
is.dna	is.dna
kable.recolor	kable.recolor
keep.tips	keep.tips
lapply.across.names	lapply.across.names
lm.fx.pv	lm.fx.pv
logistic	logistic
logit	logit
make.pos.sig	make.pos.sig
make.results.matrix	make.results.matrix
make.signs	make.signs
make.sigs	make.sigs
make.sim	make.sim
make.simulated.denoised.data	make.simulated.denoised.data
master.fx.matrix	master.fx.matrix
master.mtx.wrapper	master.mtx.wrapper
matrix.plm	matrix.plm
maybeParApply	maybeParApply
mcapply	mcapply
min.nonzero	min.nonzero
multi.enrich	multi.enrich
NameFaker	NameFaker
non.interactive.plot	non.interactive.plot
nonequiv.pos.sig	nonequiv.pos.sig
nonparallel.results.generator	nonparallel.results.generator
nw	nw
optimize.b.wrapper	optimize.b.wrapper
output.enr.table	output.enr.table
pblapply.across.names	pblapply.across.names
pbmcapply	pbmcapply
phylolm.fx.pv	phylolm.fx.pv
phylolm.subset	phylolm.subset
pick.env.dset.fx	pick.env.dset.fx
plot.labeled.phenotype.trees	plot.labeled.phenotype.trees
plot.pheno.distributions	plot.pheno.distributions
plot.phenotype.trees	plot.phenotype.trees
prep.mtx.for.write	prep.mtx.for.write
prepare.vsearch.input	prepare.vsearch.input
prev.addw	prev.addw
process.16s	process.16s
pv1	pv1
pz.error	pz.error
pz.message	pz.message
pz.options	pz.options
pz.warning	pz.warning
qvals	qvals
random.species.from.file	random.species.from.file
read.abd.metadata	read.abd.metadata
read.abd.metadata.biom	read.abd.metadata.biom
read.abd.metadata.tabular	read.abd.metadata.tabular
regularize.pET	regularize.pET
remove.allzero.abundances	remove.allzero.abundances
rem_unobs_clades	rem_unobs_clades
rep.col	rep.col
result.wrapper.plm	result.wrapper.plm
results.report	results.report
retain.observed.taxa	retain.observed.taxa
rnd.fx.pv	rnd.fx.pv
rndpos.fx.pv	rndpos.fx.pv
run.vsearch	run.vsearch
sanity.check.abundance	sanity.check.abundance
sanity.check.metadata	sanity.check.metadata
score.regularization	score.regularization
set_data_internal	set_data_internal
simple.prevalence	simple.prevalence
simulate.binom.mtx	simulate.binom.mtx
simulate.counts	simulate.counts
single.cluster.plot	single.cluster.plot
small.merge	small.merge
sparseMelt	sparseMelt
style.parse	style.parse
sum.nonunique.vsearch	sum.nonunique.vsearch
tax.annot	tax.annot
tbl.result.qvs	tbl.result.qvs
threshold.pos.sigs	threshold.pos.sigs
tipToRoot	tipToRoot
tree.to.dist	tree.to.dist
truncated	truncated
write.test.biom	write.test.biom
write.test.tabular	write.test.tabular
zipData	zipData
zipLapply	zipLapply
zipSapply	zipSapply
