Metabolomics::Banks::BloodExposome(3)

NAME
Metabolomics::Banks::BloodExposome - Perl extension for BloodExposome bank

VERSION
Version 0.1

SYNOPSIS
    use Metabolomics::Banks::BloodExposome;

DESCRIPTION
        Metabolomics::Banks::BloodExposome is a full package for Perl allowing to build a generic Perl bank object from Blood exposome bank resource.

EXPORT

SUBROUTINES/METHODS

  METHOD new
        ## Description : new
        ## Input : $self
        ## Ouput : bless $self ;
        ## Usage : new() ;

  METHOD __refBloodExposomeEntry__
        ## Description : init a new blood exposome entry
        ## Input : void
        ## Output : refEntry
        ## Usage : $self->__refBloodExposomeEntry__() ;

  METHOD _getEntry_EXACT_MASS
        ## Description : PRIVATE method _getEntry_EXACT_MASS on a refBloodExposomeEntry object
        ## Input : void
        ## Output : $EXACT_MASS
        ## Usage : my ( $EXACT_MASS ) = $entry->_getEntry_EXACT_MASS () ;

  METHOD _getEntry_CHARGE
        ## Description : PRIVATE method _getEntry_CHARGE on a refBloodExposomeEntry object
        ## Input : void
        ## Output : $CHARGE
        ## Usage : my ( $CHARGE ) = $entry->_getEntry_CHARGE () ;

  METHOD _getEntry_COMPOUND_NAME
        ## Description : PRIVATE method _getEntry_COMPOUND_NAME on a refBloodExposomeEntry object
        ## Input : void
        ## Output : $COMPOUND_NAME
        ## Usage : my ( $COMPOUND_NAME ) = $entry->_getEntry_COMPOUND_NAME () ;

  METHOD getMetabolitesFromSource
        ## Description : get the list of metabolite entries from $source file and set the Metabolomics::Banks::BloodExposome object
        ## Input : $source (file from the metabolomics-references project)
        ## Output : an int as $entriesNb
        ## Usage : my ( $entriesNb ) = $self->getMetabolitesFromSource ( $source ) ;

  METHOD buildTheoPeakBankFromEntries
        ## Description : building from a Metabolomics::Banks::BloodExposome object, a bank integrating each potential entry in a metabolomics format (POSITIVE or NEGATIVE forms)
        ## Input : $queryMode [POS|NEG]
        ## Output : int as $entryNb
        ## Usage : my $nb = $oBank->buildTheoPeakBankFromEntries() ;

AUTHOR
Franck Giacomoni, "<franck.giacomoni at inra.fr>"

SEE ALSO
All information about Metabolomics::Fragment would be find here: https://services.pfem.clermont.inra.fr/gitlab/fgiacomoni/metabolomics-fragnot

BUGS
Please report any bugs or feature requests to "bug-Metabolomics-Fragment-Annotation at rt.cpan.org", or through the web interface at <https://rt.cpan.org/Public/Dist/Display.html?Name=Metabolomics-Fragment-Annotation>. I will be notified, and then you'll automatically be notified of progress on your bug as I make changes.

SUPPORT
You can find documentation for this module with the perldoc command.

    perldoc Metabolomics::Fragment::Annotation

•   RT: CPAN's request tracker (report bugs here)

    <https://rt.cpan.org/Public/Dist/Display.html?Name=Metabolomics-Fragment-Annotation>

•   AnnoCPAN: Annotated CPAN documentation

    <http://annocpan.org/dist/Metabolomics-Fragment-Annotation>

•   CPAN Ratings

    <https://cpanratings.perl.org/d/Metabolomics-Fragment-Annotation>

•   Search CPAN

    <https://metacpan.org/release/Metabolomics-Fragment-Annotation>

ACKNOWLEDGEMENTS

LICENSE AND COPYRIGHT
CeCILL Copyright (C) 2019 by Franck Giacomoni

Initiated by Franck Giacomoni

followed by INRA PFEM team

Web Site = INRA PFEM