##fileformat=VCFv4.1
##fileDate=20090805
##source=myImputationProgramV3.1
##reference=file:///seq/references/1000GenomesPilot-NCBI36.fasta
##contig=<ID=20,length=62435964,assembly=B36,md5=f126cdf8a6e0c7f379d618ff66beb2da,species="Homo sapiens",taxonomy=x>
##phasing=partial
##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of Samples With Data">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
##INFO=<ID=AA,Number=1,Type=String,Description="Ancestral Allele">
##INFO=<ID=DB,Number=0,Type=Flag,Description="dbSNP membership, build 129">
##INFO=<ID=H2,Number=0,Type=Flag,Description="HapMap2 membership">
##FILTER=<ID=q10,Description="Quality below 10">
##FILTER=<ID=s50,Description="Less than 50% of samples have data">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##FORMAT=<ID=HQ,Number=2,Type=Integer,Description="Haplotype Quality">
##FORMAT=<ID=AD,Number=.,Type=Integer,Description="Allelic depths for the ref and alt alleles in the order listed">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO	FORMAT	NA00001	NA00002	NA00003
22	30025797	TR1	A	T	29	PASS	NS=3;DP=14;AF=0.5;DB;H2	GT:GQ:DP:HQ:AD	0|0:48:1:51,51:0,1	1|0:48:8:51,51:4,4	1/1:43:4:.,.:1,2
22	40418496	TR2	T	C	3	q10	NS=3;DP=11;AF=0.017	GT:GQ:DP:HQ	0|0:49:3:58,50	0|1:3:5:65,3	0/0:41:3:65,3
22	40419252	TR3	C	G,T	67	PASS	NS=2;DP=10;AF=0.333,0.667;AA=T;DB	GT:GQ:DP:HQ	1|2:21:6:23,27	2|1:2:0:18,2	2/2:35:4:18,2
12	25245320	TR10	T	TAGG	47	PASS	NS=3;DP=13;AA=T	GT:GQ:DP:HQ	0|0:54:7:56,60	0|0:48:4:51,51	0/1:61:2
12	25245320	TR10	TGTA	T,TG	50	PASS	NS=3;DP=9;AA=G	GT:GQ:DP:AD	0/1:35:4:2,1,1	0/2:17:5:1,1,3	1/1:40:3:0,2,1
12	25245320	TR10	TGA	T	29	PASS	NS=3;DP=14;AF=0.5;DB;H2	GT:GQ:DP:HQ:AD	0|0:48:1:51,51:1,0	1|0:48:8:51,51:4,4	1/1:43:5:.,.:0,5
2	218270043	TR7	GG	G	30	PASS	NS=3;DP=14;AF=0.5;DB;H2	GT:GQ:DP:HQ:AD	0|0:48:3:51,51:3,0	1|0:48:8:51,51:3,5	1/1:43:6:.,.:0,6
2	218270044	TR8	G	GG	67	PASS	NS=2;DP=10;AF=0.333,0.667;AA=T;DB	GT:GQ:DP:HQ	1|0:21:6:23,27	0|0:2:0:18,2	1/1:35:4:18,2
