# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Thu May 29 21:18:09 2025
# ------------------------------------------------

package:
  name: msfragger
  version: '4.2'
source:
  sha256: 55aa45f2d0c65dbb06cc1bbba32497d40cd65f28dda6a58b50bcb7caa71b2c86
  url: https://msfragger-upgrader.nesvilab.org/upgrader/download.php?token=0000000&download=Release%204.2%24zip
build:
  noarch: generic
  number: '0'
  run_exports:
    - msfragger >=4.2,<5.0a0
  string: py311hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h4bc722e_7
    - ca-certificates 2025.4.26 hbd8a1cb_0
    - ld_impl_linux-64 2.43 h712a8e2_4
    - libexpat 2.7.0 h5888daf_0
    - libffi 3.4.6 h2dba641_1
    - libgcc 15.1.0 h767d61c_2
    - libgcc-ng 15.1.0 h69a702a_2
    - libgomp 15.1.0 h767d61c_2
    - liblzma 5.8.1 hb9d3cd8_1
    - libnsl 2.0.1 hd590300_0
    - libsqlite 3.50.0 hee588c1_0
    - libuuid 2.38.1 h0b41bf4_0
    - libxcrypt 4.4.36 hd590300_1
    - libzlib 1.3.1 hb9d3cd8_2
    - ncurses 6.5 h2d0b736_3
    - openssl 3.5.0 h7b32b05_1
    - pip 25.1.1 pyh8b19718_0
    - python 3.11.12 h9e4cc4f_0_cpython
    - readline 8.2 h8c095d6_2
    - setuptools 80.8.0 pyhff2d567_0
    - tk 8.6.13 noxft_hd72426e_102
    - tzdata 2025b h78e105d_0
    - unzip 6.0 h7f98852_3
    - wheel 0.45.1 pyhd8ed1ab_1
  run:
    - mono >=5, <6
    - openjdk >=11
    - python =3.11
    - zlib >=1.2.13
test:
  commands:
    - which msfragger
about:
  description: 'MSFragger is an ultrafast database search tool for peptide identification
    in mass spectrometry-based proteomics.

    It has demonstrated excellent performance across a wide range of datasets and
    applications.

    MSFragger is suitable for standard shotgun proteomics analyses as well as large
    datasets (including timsTOF PASEF data),

    enzyme unconstrained searches (e.g., peptidome),

    open database searches (e.g., precursor mass tolerance set to hundreds of Daltons)
    for identification

    of modified peptides, and glycopeptide identification (N-linked and O-linked).


    MSFragger is available freely for academic research and educational purposes only,
    in accordance with the terms at https://msfragger.arsci.com/upgrader/MSFragger-LICENSE.pdf.

    '
  home: https://github.com/Nesvilab/MSFragger
  license: Academic License
  license_file:
    - licenses/LICENSE-ACADEMIC.pdf
  summary: "Ultrafast, comprehensive peptide identification for mass spectrometry\u2013\
    based proteomics"
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - doi:10.1038/nmeth.4256
    - doi:10.1038/s41467-020-17921-y
    - doi:10.1038/s41592-020-0967-9
  notes: 'The "msfragger" command runs the MSFragger java program.

    '
