# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Thu Jun  2 14:53:31 2022
# ------------------------------------------------

package:
  name: mitoz
  version: '3.3'
source:
  sha256: 8a17bcfe1289a4eec903b927a9c42b2fde45337347b730e1edc4231c5d89ae15
  url: https://github.com/linzhi2013/MitoZ/releases/download/3.3/mitoz-3.3.tar.gz
build:
  entry_points:
    - mitoz = mitoz.MitoZ:main
    - mitoz-tools = mitoz.tools:main
  noarch: python
  number: '1'
  script: python -m pip install --no-deps --ignore-installed .
  string: pypl5321hdfd78af_1
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - bzip2 1.0.8 h7f98852_4
    - ca-certificates 2022.5.18.1 ha878542_0
    - circos 0.69.8 hdfd78af_1
    - expat 2.4.8 h27087fc_0
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.0 h8e229c2_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.10.4 h0708190_1
    - giflib 5.2.1 h36c2ea0_2
    - icu 70.1 h27087fc_0
    - jpeg 9e h166bdaf_1
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - lerc 3.0 h9c3ff4c_0
    - libdeflate 1.10 h7f98852_0
    - libffi 3.4.2 h7f98852_5
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgd 2.3.3 h18fbbfe_3
    - libgomp 12.1.0 h8d9b700_16
    - libnsl 2.0.0 h7f98852_0
    - libpng 1.6.37 h21135ba_2
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - libtiff 4.4.0 h0fcbabc_0
    - libuuid 2.32.1 h7f98852_1000
    - libwebp 1.2.2 h3452ae3_0
    - libwebp-base 1.2.2 h7f98852_1
    - libzlib 1.2.12 h166bdaf_0
    - lz4-c 1.9.3 h9c3ff4c_1
    - ncurses 6.3 h27087fc_1
    - openssl 3.0.3 h166bdaf_0
    - perl 5.32.1 2_h7f98852_perl5
    - perl-autoloader 5.74 pl5321hdfd78af_3
    - perl-carp 1.50 pl5321hd8ed1ab_0
    - perl-clone 0.42 pl5321hec16e2b_2
    - perl-config-general 2.65 pl5321hdfd78af_0
    - perl-digest-perl-md5 1.9 pl5321hdfd78af_2
    - perl-dynaloader 1.25 pl5321hdfd78af_2
    - perl-exporter 5.74 pl5321hd8ed1ab_0
    - perl-exporter-tiny 1.002002 pl5321hdfd78af_0
    - perl-extutils-makemaker 7.64 pl5321hd8ed1ab_0
    - perl-font-ttf 1.06 pl5321hdfd78af_1
    - perl-gd 2.76 pl5321h5b5514e_1
    - perl-io-string 1.08 pl5321hdfd78af_4
    - perl-list-moreutils 0.430 pl5321hdfd78af_0
    - perl-list-moreutils-xs 0.430 pl5321hec16e2b_1
    - perl-math-bezier 0.01 pl5321hdfd78af_2
    - perl-math-round 0.07 pl5321hdfd78af_2
    - perl-math-vecstat 0.08 pl5321hdfd78af_2
    - perl-module-implementation 0.09 pl5321hdfd78af_3
    - perl-module-runtime 0.016 pl5321hdfd78af_2
    - perl-number-format 1.75 pl5321hdfd78af_4
    - perl-params-validate 1.30 pl5321hec16e2b_1
    - perl-pathtools 3.75 pl5321hec16e2b_3
    - perl-readonly 2.05 pl5321hdfd78af_1
    - perl-regexp-common 2017060201 pl5321hdfd78af_1
    - perl-scalar-list-utils 1.62 pl5321hec16e2b_0
    - perl-set-intspan 1.19 pl5321hdfd78af_2
    - perl-statistics-basic 1.6611 pl5321hdfd78af_3
    - perl-svg 2.87 pl5321hdfd78af_0
    - perl-text-format 0.62 pl5321hdfd78af_0
    - perl-time-hires 1.9764 pl5321hec16e2b_2
    - perl-try-tiny 0.31 pl5321hdfd78af_0
    - perl-xml-parser 2.44_01 pl5321hc3e0081_1003
    - pip 22.1.2 pyhd8ed1ab_0
    - python 3.10.4 h2660328_0_cpython
    - python_abi 3.10 2_cp310
    - readline 8.1 h46c0cb4_0
    - setuptools 62.3.2 py310hff52083_0
    - sqlite 3.38.5 h4ff8645_0
    - tk 8.6.12 h27826a3_0
    - tzdata 2022a h191b570_0
    - wheel 0.37.1 pyhd8ed1ab_0
    - xz 5.2.5 h516909a_1
    - zlib 1.2.12 h166bdaf_0
    - zstd 1.5.2 h8a70e8d_1
  run:
    - biopython
    - blast
    - bs4
    - bwa
    - circos=0.69
    - ete3>=3.1.2
    - fastp
    - hmmer=3.1b2
    - infernal=1.1.1
    - libgd
    - megahit
    - openjdk
    - perl-bioperl
    - perl-clone
    - perl-list-moreutils
    - perl-params-validate
    - perl=5.26
    - python>=3.6
    - requests
    - samtools
    - seqkit
    - spades
    - tbl2asn
test:
  commands:
    - mitoz --version
    - mitoz-tools --version
  imports:
    - mitoz
about:
  home: https://github.com/linzhi2013/MitoZ
  license: GPLv3
  license_file: LICENSE
  summary: 'MitoZ: A toolkit for assembly, annotation, and visualization of animal
    mitochondrial genomes'
extra:
  copy_test_source_files: true
  final: true
  maintainers:
    - linzhi2013
