-p threads=2
-p assembly_mem=128
-p assembler=soap
-p scores=33
-p min_read_length=80
-p min_contig_len=100
-p minQScore=20
-p Ks=79,49
-p min_gap=7
-p min_clip=20
-p min_match=30,0.3
-p min_logfc=5
-p min_cpm=0.1
-p fdr=0.05
-p sort_ram=2G
-p gene_filter=
-p var_filter=
-p splice_motif_mismatch=4
-p fastqCaseFormat=cases/%_R*.fastq.gz
-p fastqControlFormat=controls/%_R*.fastq.gz
-p assemblyFasta=
-p run_de_step=true
