For installation and usage instructions, see Documentation

Dashboard mode

Ideal for monitoring a single run/sample in real-time.

Click the icon next to the sample you wish to load into Dashboard mode.

Compare mode

Comparison plots for real-time and previously analysed samples.

To access Compare mode, select at least one sample using the below.

###### Export data

LCA minimum abundance cutoff:
0% 0.1% 1% 2%
Taxonomic rank:
Columns:
Name
NCBI ID
Rank
Read count
Summed read count
Mean identity
Mean max identity
Field separator:
Comma Tab Colon Semicolon

###### Sample Map

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###### Sample selector

Shift click on column headers for multi-column ordering.

| Sample ID | Run ID | Yield (Gb) | Basecalled reads | Reads analysed | Pipeline | Status | Sequencing date | Analysis date | More info
--- | --- | --- | --- | --- | --- | --- | --- | --- | --- | ---

##### Sample information

##### Sample

Name:
Run:
  the_run_id
Sequencing date:
  10/06/2022
Analysis date:
  11/06/2022

##### Summary

Yield (Gb):
  17.5
Basecalled reads:
  127,893
Reads passed filter:
  127,893
Reads analysed:
  127,893
Reads classified:
  127,893
Reads unclassified:
  127,893
Reads with poor alignments:
  127,893

##### Analysis

MARTi Engine version:
  v0.9.10
Status:
  Complete
Pipeline:
  BlastLCA

##### Please select at least one sample!

In order to export data, you must select at least one sample from the Sample selector table below using the checkboxes