# Output files of scShiba/SnakeScShiba

The output directory of **scShiba** contains the following sub directories:

- `events`: Text files of alternative splicing events. Note that the events are limited to annotated ones.
- `junctions`: Junction read counts.
- `results`: Results of differential splicing analysis.

The following sub directories are added for when **SnakeScShiba** is used:

- `benchmark`: [Benchmarking](https://snakemake.readthedocs.io/en/stable/tutorial/additional_features.html) results.
- `log`: Log files of each step.

Please refer to the [Shiba/SnakeShiba](shiba.md) documentation for more details.