.. MacSyFinder - Detection of macromolecular systems in protein datasets
    using systems modelling and similarity search.
    Authors: Sophie Abby, Bertrand Néron
    Copyright © 2014-2023 Institut Pasteur (Paris) and CNRS.
    See the COPYRIGHT file for details
    MacsyFinder is distributed under the terms of the GNU General Public License (GPLv3).
    See the COPYING file for details.

.. _user_guide:

==========
User Guide
==========

Running MacSyFinder
===================
.. toctree::
   :maxdepth: 2

   new_v2
   installation
   quickstart
   input
   outputs
   big_data


MacSyFinder functioning
=======================
.. toctree::
   :maxdepth: 2

   model_definition
   functioning



Frequently Asked Questions
==========================
.. toctree::
   :maxdepth: 2
   
   FAQ
