"use strict";
Object.defineProperty(exports, "__esModule", { value: true });
exports.REQUIRED_COMMANDS = exports.SORT_GFF_EXAMPLES = exports.SORT_GFF_DESCRIPTION = void 0;
exports.SORT_GFF_DESCRIPTION = 'Helper utility to sort GFF files for tabix. Moves all lines starting with # to the top of the file, and sort by refname and start position using unix utilities sort and grep';
exports.SORT_GFF_EXAMPLES = [
    '# sort gff and pipe to bgzip',
    '$ jbrowse sort-gff input.gff | bgzip > sorted.gff.gz',
    '$ tabix sorted.gff.gz',
    '',
    '# sort gff from stdin',
    '$ cat input.gff | jbrowse sort-gff | bgzip > sorted.gff.gz',
];
exports.REQUIRED_COMMANDS = ['sh', 'sort', 'grep'];
