"use strict";(self.webpackChunk_jbrowse_web=self.webpackChunk_jbrowse_web||[]).push([[4609],{4609:function(e,n,t){t.r(n),t.d(n,{default:function(){return d}});t(96902);var s=t(52809),i=t(35388),r=t(99688),h=t(44536),o=t(46186),c=t(25471),a=t(29938);function d(e){var n=e.handleClose;return(0,a.jsxs)(o.Dialog,{maxWidth:"xl",open:!0,onClose:function(){return n()},title:"Feature sequence panel help",children:[(0,a.jsxs)(s.Z,{children:[(0,a.jsx)(i.Z,{paragraph:!0,children:'The "Feature sequence" panel shows the underlying genomic sequence for a given feature, fetched from the reference genome.'}),(0,a.jsx)(i.Z,{children:"For gene features, this panel does special calculations to e.g. stitch together the coding sequence, the options are:"}),(0,a.jsxs)("ul",{children:[(0,a.jsx)("li",{children:"CDS - shows the stitched together CDS sequences"}),(0,a.jsx)("li",{children:'Protein - the translated coding sequence, with the "standard" genetic code'}),(0,a.jsx)("li",{children:"cDNA - shows the UTRs and stitched together CDS sequences"}),(0,a.jsx)("li",{children:"Gene w/ introns - the sequence underlying the entire gene including including introns, with UTR and CDS highlighted"}),(0,a.jsx)("li",{children:'Gene w/ Nbp introns - same "Gene w/ introns", but limiting to a subset of the intron sequence displayed'}),(0,a.jsx)("li",{children:'Gene +/- Nbp up+down stream - same as "Gene w/ introns" but with up and downstream sequence displayed'}),(0,a.jsx)("li",{children:'Gene +/- Nbp up+down stream, Nbp introns - same as "Gene w/ introns", but with limited intron sequence displayed and up and downstream sequence'})]}),(0,a.jsx)(i.Z,{paragraph:!0,children:"For other feature types, the options are:"}),(0,a.jsxs)("ul",{children:[(0,a.jsx)("li",{children:"Feature sequence - the reference genome sequence underlying the feature"}),(0,a.jsx)("li",{children:"Feature sequence +/- Nbp up+down stream - the reference genome sequence underlying the feature, with the up and downstream sequence"})]}),(0,a.jsxs)(i.Z,{children:['Note: you can use the "gear icon" ',(0,a.jsx)(c.Z,{})," to edit the number of bp displayed up/downstream and in the intron region"]})]}),(0,a.jsx)(r.Z,{children:(0,a.jsx)(h.Z,{onClick:function(){return n()},autoFocus:!0,variant:"contained",children:"Close"})})]})}}}]);
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