{
  "assemblies": [
    {
      "name": "hg19",
      "aliases": ["GRCh37"],
      "sequence": {
        "type": "ReferenceSequenceTrack",
        "trackId": "Pd8Wh30ei9R",
        "adapter": {
          "type": "ChromSizesAdapter",
          "chromSizesLocation": {
            "uri": "../hg19.chrom.sizes",
            "locationType": "UriLocation"
          }
        }
      },
      "refNameAliases": {
        "adapter": {
          "type": "RefNameAliasAdapter",
          "location": {
            "uri": "../hg19_aliases_chr.txt",
            "locationType": "UriLocation"
          }
        }
      }
    }
  ],
  "tracks": [
    {
      "type": "VariantTrack",
      "trackId": "sv_track",
      "name": "human chord test",
      "assemblyNames": ["hg19"],
      "adapter": {
        "type": "VcfTabixAdapter",
        "vcfGzLocation": {
          "uri": "hs37d5.HG002-SequelII-CCS.sv.vcf.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "hs37d5.HG002-SequelII-CCS.sv.vcf.gz.tbi",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "type": "VariantTrack",
      "trackId": "pacbio_vcf",
      "name": "HG002.hs37d5.bnds",
      "assemblyNames": ["hg19"],
      "category": ["PacBio", "VCF"],
      "adapter": {
        "type": "VcfTabixAdapter",
        "vcfGzLocation": {
          "uri": "pacbio_chr3_chr6.vcf.gz",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "pacbio_chr3_chr6.vcf.gz.tbi",
            "locationType": "UriLocation"
          }
        }
      }
    },
    {
      "type": "AlignmentsTrack",
      "trackId": "pacbio_hg002_breakpoints",
      "name": "HG002.hs37d5.11kb",
      "assemblyNames": ["hg19"],
      "category": ["PacBio", "BAM"],
      "adapter": {
        "type": "BamAdapter",
        "bamLocation": {
          "uri": "pacbio_chr3_chr6.bam",
          "locationType": "UriLocation"
        },
        "index": {
          "location": {
            "uri": "pacbio_chr3_chr6.bam.bai",
            "locationType": "UriLocation"
          }
        }
      }
    }
  ],
  "defaultSession": {
    "name": "Human Example (hg19)",
    "drawerWidth": 384,
    "views": [
      {
        "id": "MiDMyyWpp",
        "type": "BreakpointSplitView",
        "headerHeight": 44,
        "height": 400,
        "displayName": "pbsv.BND.3:186700648-6:56758392 split detail",
        "trackSelectorType": "hierarchical",
        "views": [
          {
            "id": "AcZl9Uifbv",
            "type": "LinearGenomeView",
            "offsetPx": 18669656.00687344,
            "bpPerPx": 10,
            "displayedRegions": [
              {
                "refName": "chr3",
                "start": 0,
                "end": 186700647,
                "assemblyName": "hg19"
              },
              {
                "refName": "chr3",
                "start": 186700647,
                "end": 198022430,
                "assemblyName": "hg19"
              }
            ],
            "tracks": [
              {
                "type": "AlignmentsTrack",
                "configuration": "pacbio_hg002_breakpoints",
                "displays": [
                  {
                    "type": "LinearAlignmentsDisplay",
                    "configuration": "pacbio_hg002_breakpoints-LinearAlignmentsDisplay"
                  }
                ]
              },
              {
                "type": "VariantTrack",
                "configuration": "pacbio_vcf",
                "displays": [
                  {
                    "type": "LinearVariantDisplay",
                    "configuration": "pacbio_vcf-LinearVariantDisplay"
                  }
                ]
              }
            ],
            "hideControls": false,
            "hideHeader": true,
            "trackSelectorType": "hierarchical"
          },
          {
            "id": "0Q9aAu1h7g",
            "type": "LinearGenomeView",
            "offsetPx": 5675435.581319785,
            "bpPerPx": 10,
            "displayedRegions": [
              {
                "refName": "chr6",
                "start": 0,
                "end": 56758391,
                "assemblyName": "hg19"
              },
              {
                "refName": "chr6",
                "start": 56758391,
                "end": 171115067,
                "assemblyName": "hg19"
              }
            ],
            "tracks": [
              {
                "type": "AlignmentsTrack",
                "configuration": "pacbio_hg002_breakpoints",
                "displays": [
                  {
                    "type": "LinearAlignmentsDisplay",
                    "configuration": "pacbio_hg002_breakpoints-LinearAlignmentsDisplay"
                  }
                ]
              },
              {
                "type": "VariantTrack",
                "configuration": "pacbio_vcf",
                "displays": [
                  {
                    "type": "LinearVariantDisplay",
                    "configuration": "pacbio_vcf-LinearVariantDisplay"
                  }
                ]
              }
            ],
            "hideControls": false,
            "hideHeader": true,
            "trackSelectorType": "hierarchical"
          }
        ]
      }
    ],
    "widgets": {
      "hierarchicalTrackSelector": {
        "id": "hierarchicalTrackSelector",
        "type": "HierarchicalTrackSelectorWidget",
        "collapsed": {},
        "filterText": ""
      },
      "sessionManager": {
        "id": "sessionManager",
        "type": "SessionManager"
      }
    },
    "activeWidgets": {},
    "connections": {}
  },
  "connections": [
    {
      "type": "JBrowse1Connection",
      "connectionId": "COSMIC_connection_grch37",
      "name": "COSMIC (GRCh37)",
      "assemblyNames": ["hg19"],
      "dataDirLocation": {
        "uri": "https://cancer.sanger.ac.uk/jbrowse/data/json/grch37/v90/cosmic",
        "locationType": "UriLocation"
      }
    }
  ]
}
