### IsoQuant 1.2.1, 21 Apr 2020

Support for BAM files with =/X in CIGAR strings;

Fixed canonical splice site detection.

### IsoQuant 1.2.0, 28 Mar 2020

Multi-threading;

Intermediate results are saved to disc to enable quick restart via --read_assignments option;

Significantly improved precision for novel transcript detection;

Secondary alignments are now used by default;

Fixed several bugs in inconsistency detection algorithm;

Reworked polyA detection and reporting once again;

Slightly modified read assignment output format;

More informative GTF output;

Removed --has_polya option, --polya_trimmed is now used as the opposite;

Added --check_canonical option.

### IsoQuant 1.1.0, 11 Dec 2020

Significantly reworked polyA detection and reporting;

Improved detection of inconsistencies, added several new event types;

Better recall and precision for read assignment algorithm;

Fixed several bug and flaws;

Added script for counting simple stats for GTF files (srt/gtf_stats.py).

### IsoQuant 1.0.0, 12 Jul 2020

Initial release.

IsoQuant GitHub page