from isatools.isatab.dump import (
    dump,
    dumps,
    write_study_table_files,
    write_assay_table_files,
    write_value_columns,
    dump_tables_to_dataframes
)
from isatools.isatab.load import (
    merge_study_with_assay_tables,
    read_investigation_file,
    load,
    preprocess,
    ProcessSequenceFactory,
    read_tfile,
    load_table
)
from isatools.isatab.defaults import default_config_dir
from isatools.isatab.utils import IsaTabDataFrame, TransposedTabParser
from isatools.isatab.validate import validate, batch_validate
from isatools.isatab.deprecated import (
    get_multiple_index,
    find_in_between,
    IsaTabParser,
    parse_in,
    isatab_get_data_files_list_command,
    isatab_get_data_files_collection_command,
    slice_data_files,
    isatab_get_factor_names_command,
    isatab_get_factor_values_command,
    filter_data,
    query_isatab,
    get_sources_for_sample,
    get_study_groups,
    get_study_groups_samples_sizes,
    get_study_groups_data_sizes,
    isatab_get_factors_summary_command,
    get_data_for_sample,
    get_characteristics_summary,
    get_study_variable_summary,
    get_study_group_factors,
    get_filtered_df_on_factors_list
)
