3:th2:e_coli_i running "influx_i.py cases/e_coli_i" ...
1:th0:rdep running "influx_s.py --install_rdep" ...
5:th3:e_coli.noopt running "influx_s.py --noopt cases/e_coli_1_" ...
2:th1:e_coli running "influx_s.py cases/e_coli" ...
4:th4:e_coli_i_emu running "influx_i.py --emu cases/e_coli_i_1_" ...
8:th6:e_coli.emu.mc4 running "influx_s.py --emu --sens mc=4 --seed 7 --np 4 --wkvh cases/e_coli_4_" ...
6:th5:e_coli.emu running "influx_s.py --emu cases/e_coli_2_" ...
7:th7:e_coli.mc4 running "influx_s.py --sens mc=4 --seed 7 --np 4 --wkvh cases/e_coli_3_" ...
done 1:th0:rdep (3.92 s)
9:th0:e_coli_i.mc4 running "influx_i.py --sens mc=4 --seed 777 --np 4 --wkvh cases/e_coli_i_2_" ...
done 6:th5:e_coli.emu (7.07 s)
10:th5:e_coli_i.mc4.np1 running "influx_i.py --sens mc=4 --seed 7 --np 1 --wkvh cases/e_coli_i_3_" ...
done 5:th3:e_coli.noopt (7.97 s)
11:th3:e_coli_i.emu.mc4 running "influx_i.py --sens mc=4 --emu --seed 7 --np 4 --wkvh cases/e_coli_i_4_" ...
done 2:th1:e_coli (9.28 s)
12:th1:e_coli_NA running "influx_s.py cases/e_coli_NA" ...
done 7:th7:e_coli.mc4 (15.46 s)
13:th7:e_coli_growth running "influx_s.py cases/e_coli_growth" ...
done 8:th6:e_coli.emu.mc4 (15.60 s)
14:th6:e_coli_BM_eqs running "influx_s.py cases/Modele_GC-AAprot_BM_pmi_SSOtest" ...
done 12:th1:e_coli_NA (9.08 s)
15:th1:utf8_BOM running "ftbl2netan.py cases/e_coli_growth_utf8 > cases/e_coli_growth_utf8.netan" ...
done 15:th1:utf8_BOM (2.48 s)
16:th1:constr_ineq_clownr running "influx_s.py cases/explicit_ineq_constr_flux" ...
done 13:th7:e_coli_growth (9.92 s)
17:th7:spe_char running "influx_s.py cases/spe_char_flux" ...
done 16:th1:constr_ineq_clownr (6.19 s)
18:th1:long_reac running "influx_s.py --fullsys cases/long_reac" ...
done 17:th7:spe_char (6.69 s)
19:th7:e_coli_prl running "influx_s.py cases/e_coli_glc1-6n" ...
done 3:th2:e_coli_i (32.78 s)
20:th2:e_coli_i_prl running "influx_i.py cases/e_coli_GX_prl" ...
done 18:th1:long_reac (6.37 s)
21:th1:xml_ecoli running "ftbl2metxml.py cases/e_coli" ...
done 21:th1:xml_ecoli (1.72 s)
22:th1:h_sapiens_pf running "influx_s.py --wkvh cases/h_sapiens" ...
done 4:th4:e_coli_i_emu (42.58 s)
23:th4:dzwf_nbc0 running "influx_s.py cases/Dzwf_1" ...
done 14:th6:e_coli_BM_eqs (36.48 s)
24:th6:prl_exp_mc running "influx_s.py --sens mc=4 cases/e_coli_1-Glc_exact" ...
done 23:th4:dzwf_nbc0 (22.30 s)
25:th4:utf16 running "ftbl2netan.py cases/UTF16.ftbl" ...
done 25:th4:utf16 (1.74 s)
26:th4:utf32 running "ftbl2netan.py cases/UTF32.ftbl" ...
done 26:th4:utf32 (1.86 s)
27:th4:mc_prl_weighted_pools running "influx_s.py --wkvh cases/mc_prl_weighted_pools.ftbl" ...
done 24:th6:prl_exp_mc (22.40 s)
28:th6:sln_use running "influx_s.py --sln cases/model_Man-Bio12" ...
done 28:th6:sln_use (25.27 s)
29:th6:dim_fixed running "influx_i.py cases/methanol_v1.ftbl" ...
done 22:th1:h_sapiens_pf (66.54 s)
30:th1:na_grad running "influx_i.py --wkvh cases/methanol_v2.2_bio1" ...
done 9:th0:e_coli_i.mc4 (117.42 s)
31:th0:err.too_many_dep_fluxes running "influx_s.py cases/branching-2014-09-01" ...
done 31:th0:err.too_many_dep_fluxes (3.72 s)
32:th0:err.too_many_free_fluxes.1 running "influx_s.py cases/branching_MS" ...
done 32:th0:err.too_many_free_fluxes.1 (2.22 s)
33:th0:err.too_many_free_fluxes.2 running "influx_s.py cases/err_extra_ff-2014-04-02" ...
done 19:th7:e_coli_prl (97.78 s)
34:th7:err.no_dep_fluxes running "influx_s.py cases/no_dep_fluxes" ...
done 34:th7:err.no_dep_fluxes (1.51 s)
35:th7:err.lack_fluxval running "influx_s.py cases/err_lack_fluxval" ...
done 35:th7:err.lack_fluxval (1.61 s)
36:th7:err.depflux_zero-2014-04-02 running "influx_s.py cases/err_depflux_zero-2014-04-02" ...
done 27:th4:mc_prl_weighted_pools (65.67 s)
37:th4:err.lindep_rows-2014-04-02 running "influx_s.py cases/err_lindep_rows-2014-04-02" ...
done 29:th6:dim_fixed (34.90 s)
38:th6:err.jac_rank_deficient running "influx_s.py cases/err_jac_rank_def" ...
done 33:th0:err.too_many_free_fluxes.2 (8.43 s)
39:th0:err.singular_stoech running "influx_s.py cases/err_singular_stoech" ...
done 39:th0:err.singular_stoech (2.81 s)
40:th0:err.dev_zero running "influx_s.py cases/err_dev_zero" ...
done 40:th0:err.dev_zero (1.59 s)
41:th0:err.rep_let running "influx_s.py cases/rep_let" ...
done 38:th6:err.jac_rank_deficient (6.01 s)
42:th6:err.bad_map running "influx_s.py cases/bad_map" ...
done 41:th0:err.rep_let (1.23 s)
43:th0:err.tr_miss running "influx_s.py cases/err_trans_missing" ...
done 36:th7:err.depflux_zero-2014-04-02 (8.46 s)
44:th7:input1C running "influx_i.py cases/input1C_i.ftbl" ...
done 42:th6:err.bad_map (1.26 s)
45:th6:ffguess running "influx_i.py cases/ffguess_i.ftbl" ...
done 43:th0:err.tr_miss (1.30 s)
46:th0:exe running "influx_s --version" ...
done 37:th4:err.lindep_rows-2014-04-02 (9.51 s)
47:th4:exei running "influx_i --version" ...
done 46:th0:exe (1.17 s)
48:th0:ff2ftbl running "ff2ftbl cases/e_coli > cases/e_coli_res/tmp/e_coli_ff.ftbl" ...
done 48:th0:ff2ftbl (0.66 s)
49:th0:Rreprod running "influx_s --nocalc cases/e_coli && mv -f cases/e_coli_res/tmp/e_coli.R cases/e_coli_res/tmp/e_coli.R1 && influx_s --nocalc cases/e_coli && [ "$(tail -n +5 cases/e_coli_res/tmp/e_coli.R | md5sum)" == "$(tail -n +5 cases/e_coli_res/tmp/e_coli.R1 | md5sum)" ] && rm -f cases/e_coli_res/tmp/e_coli.R1" ...
done 47:th4:exei (1.62 s)
50:th4:pso running "influx_s.py cases/e_coli_pso.ftbl" ...
done 49:th0:Rreprod (3.96 s)
51:th0:ffg running "influx_s.py --seed 777 --clownr 1.e-3 cases/ffguess_eq.ftbl" ...
done 10:th5:e_coli_i.mc4.np1 (141.46 s)
52:th5:weird_i running "influx_i.py cases/e_coli2_i.ftbl" ...
done 44:th7:input1C (8.43 s)
53:th7:mumps running "influx_s.py cases/mumps_mem.ftbl" ...
done 45:th6:ffguess (8.27 s)
54:th6:sbml_compart running "ftbl2metxml.py --cstart "_[" --cend="]" cases/sbml_compart.ftbl" ...
done 54:th6:sbml_compart (2.70 s)
55:th6:linspl running "influx_i --pref cases/ex_i_2box_lin" ...
done 52:th5:weird_i (4.91 s)
56:th5:ftbl2mtf running "ftbl2mtf cases/e_coli -o cases/e_mtf" ...
done 50:th4:pso (8.70 s)
57:th4:ftbl2mtfi running "ftbl2mtf -i cases/e_coli_i -o cases/e_mtf_i" ...
done 56:th5:ftbl2mtf (1.56 s)
58:th5:mtf2ftbl running "txt2ftbl --prefix cases/e_mtf" ...
done 57:th4:ftbl2mtfi (1.31 s)
59:th4:err_sub_net running "influx_i --prefix cases/Coli_core --emu --ffguess --noscale --ln" ...
done 58:th5:mtf2ftbl (1.11 s)
60:th5:deadend running "rm -f cases/ex_deadend.netan && ftbl2netan cases/ex_deadend > cases/ex_deadend.netan" ...
done 59:th4:err_sub_net (1.42 s)
61:th4:ftbl2kvh running "ftbl2kvh --prefix cases/e_mtf > cases/e_mtf.kvh" ...
done 60:th5:deadend (1.15 s)
62:th5:ftbl2netan running "ftbl2netan --prefix cases/e_mtf > cases/e_mtf.netan" ...
done 61:th4:ftbl2kvh (1.42 s)
63:th4:ftbl2metxml running "ftbl2metxml --prefix cases/e_mtf > cases/e_mtf.xml" ...
done 51:th0:ffg (10.33 s)
64:th0:ftbl2xgmml running "ftbl2xgmml --prefix cases/e_mtf > cases/e_mtf.xgmml" ...
done 62:th5:ftbl2netan (1.77 s)
65:th5:ftbl2cumoAb running "ftbl2cumoAb --prefix cases/e_mtf > cases/e_mtf.sys" ...
done 63:th4:ftbl2metxml (2.30 s)
66:th4:sbml running "influx_i --prefix cases/mtf/sbml1" ...
done 64:th0:ftbl2xgmml (1.76 s)
67:th0:sbmlfmap running "ftbl2cumoAb --prefix cases/mtf/sbml1 --flux cases/mtf/Coli_core_bs.tsv" ...
done 55:th6:linspl (7.67 s)
68:th6:mtfdef running "txt2ftbl cases/mtf/sbml1" ...
done 65:th5:ftbl2cumoAb (3.17 s)
69:th5:tmono running "txt2ftbl --prefix cases/mtf/tmono --inst" ...
done 68:th6:mtfdef (1.85 s)
70:th6:multi running "influx_s cases/e_coli cases/e_coli_growth" ...
done 67:th0:sbmlfmap (3.56 s)
71:th0:mv_ikin running "influx_i --pref cases/e_mtf_i" ...
done 53:th7:mumps (15.12 s)
72:th7:empty.mflux running "influx_i --pref cases/mtf/empty_opt --nocalc" ...
done 69:th5:tmono (3.15 s)
73:th5:outdir running "influx_s --nocalc cases/e_coli_6_ -o cases/tmp" ...
done 73:th5:outdir (1.95 s)
74:th5:outdir running "influx_s --nocalc cases/e_coli_7_" ...
done 74:th5:outdir (1.67 s)
75:th5:move_prl running "influx_s.py --nocalc --prefix cases/mtf/e_coli_glc1-6n" ...
done 70:th6:multi (6.89 s)
76:th6:miss_lab running "influx_s.py --pref cases/mtf/missing_lab --eprl cases/mtf/missing_lab_ple" ...
done 75:th5:move_prl (4.25 s)
77:th5:move_r running "influx_s.py --pref cases/mtf/design_test_1" ...
done 72:th7:empty.mflux (9.05 s)
78:th7:third running "python3 third.py" ...
done 78:th7:third (1.39 s)
79:th7:fullsys_i running "influx_i.py --fullsys cases/input1C_i.ftbl" ...
done 77:th5:move_r (4.22 s)
80:th5:move_prof running "influx_s.py cases/e_coli --noopt --prof" ...
done 66:th4:sbml (19.22 s)
81:th4:fullemudyn running "influx_i.py --fullsys --noopt --pref cases/mtf/MIN_M.xu5p..D.c" ...
done 76:th6:miss_lab (13.41 s)
done 80:th5:move_prof (7.11 s)
done 79:th7:fullsys_i (9.38 s)
done 11:th3:e_coli_i.emu.mc4 (178.21 s)
done 20:th2:e_coli_i_prl (160.07 s)
done 71:th0:mv_ikin (30.33 s)
done 81:th4:fullemudyn (54.13 s)
done 30:th1:na_grad (162.80 s)
---
In total, run 81 test of which 0 failed. (265.07 s)
