2:th0:e_coli running "influx_s.py cases/e_coli" ...
1:th2:rdep running "influx_s.py --install_rdep" ...
5:th4:e_coli.noopt running "influx_s.py --noopt cases/e_coli_1_" ...
6:th5:e_coli.emu running "influx_s.py --emu cases/e_coli_2_" ...
4:th1:e_coli_i_emu running "influx_i.py --emu cases/e_coli_i_1_" ...
8:th6:e_coli.emu.mc4 running "influx_s.py --emu --sens mc=4 --seed 7 --np 4 cases/e_coli_4_" ...
3:th3:e_coli_i running "influx_i.py cases/e_coli_i" ...
7:th7:e_coli.mc4 running "influx_s.py --sens mc=4 --seed 7 --np 4 cases/e_coli_3_" ...
done 1:th2:rdep (4.62 s)
9:th2:e_coli_i.mc4 running "influx_i.py --sens mc=4 --seed 777 --np 4 cases/e_coli_i_2_" ...
done 2:th0:e_coli (6.04 s)
10:th0:e_coli_i.mc4.np1 running "influx_i.py --sens mc=4 --seed 7 --np 1 cases/e_coli_i_3_" ...
done 6:th5:e_coli.emu (6.44 s)
11:th5:e_coli_i.emu.mc4 running "influx_i.py --sens mc=4 --emu --seed 7 --np 4 cases/e_coli_i_4_" ...
done 5:th4:e_coli.noopt (6.62 s)
12:th4:e_coli_NA running "influx_s.py cases/e_coli_NA" ...
done 8:th6:e_coli.emu.mc4 (13.59 s)
13:th6:e_coli_growth running "influx_s.py cases/e_coli_growth" ...
done 7:th7:e_coli.mc4 (14.16 s)
14:th7:e_coli_BM_eqs running "influx_s.py cases/Modele_GC-AAprot_BM_pmi_SSOtest" ...
done 12:th4:e_coli_NA (7.93 s)
15:th4:utf8_BOM running "ftbl2netan.py cases/e_coli_growth_utf8 > cases/e_coli_growth_utf8.netan" ...
done 15:th4:utf8_BOM (1.69 s)
16:th4:constr_ineq_clownr running "influx_s.py cases/explicit_ineq_constr_flux" ...
done 13:th6:e_coli_growth (8.48 s)
17:th6:spe_char running "influx_s.py cases/spe_char_flux" ...
done 16:th4:constr_ineq_clownr (6.43 s)
18:th4:long_reac running "influx_s.py --fullsys cases/long_reac" ...
done 17:th6:spe_char (4.91 s)
19:th6:e_coli_prl running "influx_s.py cases/e_coli_glc1-6n" ...
done 18:th4:long_reac (5.33 s)
20:th4:e_coli_i_prl running "influx_i.py cases/e_coli_GX_prl" ...
done 3:th3:e_coli_i (31.76 s)
21:th3:xml_ecoli running "ftbl2metxml.py cases/e_coli" ...
done 4:th1:e_coli_i_emu (32.17 s)
22:th1:h_sapiens_pf running "influx_s.py cases/h_sapiens" ...
done 21:th3:xml_ecoli (1.67 s)
23:th3:dzwf_nbc0 running "influx_s.py cases/Dzwf_1" ...
done 14:th7:e_coli_BM_eqs (24.06 s)
24:th7:prl_exp_mc running "influx_s.py --sens mc=4 cases/e_coli_1-Glc_exact" ...
done 24:th7:prl_exp_mc (18.77 s)
25:th7:utf16 running "ftbl2netan.py cases/UTF16.ftbl" ...
done 23:th3:dzwf_nbc0 (24.02 s)
26:th3:utf32 running "ftbl2netan.py cases/UTF32.ftbl" ...
done 25:th7:utf16 (2.69 s)
27:th7:mc_prl_weighted_pools running "influx_s.py cases/mc_prl_weighted_pools.ftbl" ...
done 26:th3:utf32 (2.62 s)
28:th3:sln_use running "influx_s.py --sln cases/model_Man-Bio12" ...
done 22:th1:h_sapiens_pf (43.64 s)
29:th1:dim_fixed running "influx_i.py cases/methanol_v1.ftbl" ...
done 28:th3:sln_use (20.52 s)
30:th3:na_grad running "influx_i.py cases/methanol_v2.2_bio1" ...
done 9:th2:e_coli_i.mc4 (87.76 s)
31:th2:err.too_many_dep_fluxes running "influx_s.py cases/branching-2014-09-01" ...
done 31:th2:err.too_many_dep_fluxes (4.97 s)
32:th2:err.too_many_free_fluxes.1 running "influx_s.py cases/branching_MS" ...
done 32:th2:err.too_many_free_fluxes.1 (3.19 s)
33:th2:err.too_many_free_fluxes.2 running "influx_s.py cases/err_extra_ff-2014-04-02" ...
done 19:th6:e_coli_prl (73.89 s)
34:th6:err.no_dep_fluxes running "influx_s.py cases/no_dep_fluxes" ...
done 34:th6:err.no_dep_fluxes (2.89 s)
35:th6:err.lack_fluxval running "influx_s.py cases/err_lack_fluxval" ...
done 35:th6:err.lack_fluxval (2.05 s)
36:th6:err.depflux_zero-2014-04-02 running "influx_s.py cases/err_depflux_zero-2014-04-02" ...
done 33:th2:err.too_many_free_fluxes.2 (9.72 s)
37:th2:err.lindep_rows-2014-04-02 running "influx_s.py cases/err_lindep_rows-2014-04-02" ...
done 27:th7:mc_prl_weighted_pools (50.93 s)
38:th7:err.jac_rank_deficient running "influx_s.py cases/err_jac_rank_def" ...
done 29:th1:dim_fixed (36.86 s)
39:th1:err.singular_stoech running "influx_s.py cases/err_singular_stoech" ...
done 36:th6:err.depflux_zero-2014-04-02 (7.70 s)
40:th6:err.dev_zero running "influx_s.py cases/err_dev_zero" ...
done 40:th6:err.dev_zero (1.69 s)
41:th6:err.rep_let running "influx_s.py cases/rep_let" ...
done 39:th1:err.singular_stoech (3.20 s)
42:th1:err.bad_map running "influx_s.py cases/bad_map" ...
done 38:th7:err.jac_rank_deficient (5.46 s)
43:th7:err.tr_miss running "influx_s.py cases/err_trans_missing" ...
done 41:th6:err.rep_let (1.76 s)
44:th6:input1C running "influx_i.py cases/input1C_i.ftbl" ...
done 42:th1:err.bad_map (1.74 s)
45:th1:ffguess running "influx_i.py cases/ffguess_i.ftbl" ...
done 43:th7:err.tr_miss (1.89 s)
46:th7:exe running "influx_s --version" ...
done 37:th2:err.lindep_rows-2014-04-02 (8.96 s)
47:th2:exei running "influx_i --version" ...
done 46:th7:exe (1.35 s)
48:th7:ff2ftbl running "ff2ftbl cases/e_coli > cases/e_coli_ff.ftbl" ...
done 10:th0:e_coli_i.mc4.np1 (113.98 s)
49:th0:Rreprod running "influx_s --nocalc cases/e_coli && mv -f cases/e_coli.R cases/e_coli.R1 && influx_s --nocalc cases/e_coli && [ "$(tail -n +5 cases/e_coli.R | md5sum)" == "$(tail -n +5 cases/e_coli.R1 | md5sum)" ] && rm -f cases/e_coli.R1" ...
done 48:th7:ff2ftbl (0.93 s)
50:th7:pso running "influx_s.py cases/e_coli_pso.ftbl" ...
done 47:th2:exei (1.18 s)
51:th2:ffg running "influx_s.py --seed 777 --clownr 1.e-3 cases/ffguess_eq.ftbl" ...
done 49:th0:Rreprod (5.06 s)
52:th0:weird_i running "influx_i.py cases/e_coli2_i.ftbl" ...
done 44:th6:input1C (11.19 s)
53:th6:mumps running "influx_s.py cases/mumps_mem.ftbl" ...
done 45:th1:ffguess (11.30 s)
54:th1:sbml_compart running "ftbl2metxml.py --cstart "_[" --cend="]" cases/sbml_compart.ftbl" ...
done 52:th0:weird_i (6.13 s)
55:th0:linspl running "influx_i --pref cases/ex_i_2box_lin" ...
done 54:th1:sbml_compart (3.85 s)
56:th1:ftbl2mtf running "ftbl2mtf cases/e_coli -o cases/e_mtf" ...
done 56:th1:ftbl2mtf (4.05 s)
57:th1:mtf2ftbl running "txt2ftbl --prefix cases/e_mtf" ...
done 53:th6:mumps (9.61 s)
58:th6:err_sub_net running "influx_i --prefix cases/Coli_core --emu --ffguess --noscale --ln" ...
done 50:th7:pso (17.67 s)
59:th7:deadend running "rm -f cases/ex_deadend.netan && ftbl2netan cases/ex_deadend > cases/ex_deadend.netan" ...
done 57:th1:mtf2ftbl (4.09 s)
60:th1:ftbl2kvh running "ftbl2kvh --prefix cases/e_mtf > cases/e_mtf.kvh" ...
done 59:th7:deadend (4.83 s)
61:th7:ftbl2netan running "ftbl2netan --prefix cases/e_mtf > cases/e_mtf.netan" ...
done 58:th6:err_sub_net (6.15 s)
62:th6:ftbl2metxml running "ftbl2metxml --prefix cases/e_mtf > cases/e_mtf.xml" ...
done 55:th0:linspl (14.07 s)
63:th0:ftbl2xgmml running "ftbl2xgmml --prefix cases/e_mtf > cases/e_mtf.xgmml" ...
done 60:th1:ftbl2kvh (4.75 s)
64:th1:ftbl2cumoAb running "ftbl2cumoAb --prefix cases/e_mtf > cases/e_mtf.sys" ...
done 11:th5:e_coli_i.emu.mc4 (140.24 s)
65:th5:sbml running "influx_i --prefix cases/mtf/sbml1" ...
done 61:th7:ftbl2netan (4.13 s)
66:th7:sbmlfmap running "ftbl2cumoAb --prefix cases/mtf/sbml1 --flux cases/mtf/Coli_core_bs.tsv" ...
done 62:th6:ftbl2metxml (3.42 s)
done 63:th0:ftbl2xgmml (3.47 s)
done 64:th1:ftbl2cumoAb (6.10 s)
done 66:th7:sbmlfmap (5.53 s)
done 20:th4:e_coli_i_prl (130.87 s)
done 51:th2:ffg (40.67 s)
done 65:th5:sbml (19.94 s)
done 30:th3:na_grad (158.97 s)
---
In total, run 66 test of which 1 failed (err.lindep_rows-2014-04-02 [37]). (239.84 s)
