# This file created by conda-build 3.19.2
# meta.yaml template originally from:
# /opt/recipe, last modified Wed May 20 07:34:50 2020
# ------------------------------------------------

package:
    name: gridss
    version: 2.9.2
source:
    sha256: 4cb2c0b30292a0a7e6b12f3f5fd865c5962273cb2bc4b4de9f439dfd1c29b385
    url: https://github.com/PapenfussLab/gridss/releases/download/v2.9.2/gridss-2.9.2.tar.gz
build:
    noarch: generic
    number: '0'
    string: '0'
requirements:
    run:
        - bioconductor-structuralvariantannotation
        - bwa >=0.7
        - openjdk >=8
        - r-argparser
        - r-base >=3.6
        - r-stringdist
        - r-testthat
        - r-tidyverse
        - samtools >=1.10
test:
    commands:
        - gridss 2>&1 | grep 'Usage:'
        - gridss_somatic_filter --help 2>&1 | grep 'usage:'
        - CallVariants --help 2>&1 | grep 'USAGE:'
        - CollectGridssMetrics --help 2>&1 | grep 'USAGE:'
about:
    home: https://github.com/PapenfussLab/gridss
    license: GPL-3.0
    license_family: GPL
    summary: 'GRIDSS: the Genomic Rearrangement IDentification Software Suite'
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:gridss
        - doi:10.1101/110387
