In addition, Genome STRiP version 2.0 is distributed, in part, under and subject to the provisions of licenses for: 

(a) Ant (http://ant.apache.org/); (http://www.apache.org/licenses/LICENSE-2.0.html); Copyright © 2000-2014 The Apache Software Foundation.  All rights reserved.
(b) Apache commons (http://commons.apache.org/); (http://www.apache.org/licenses/LICENSE-2.0.html); Copyright © 2015 The Apache Software Foundation.  All rights reserved.
(c) Apache HttpComponents (http://hc.apache.org/); (http://www.apache.org/licenses/LICENSE-2.0.html); Copyright © 2015 The Apache Software Foundation. All rights reserved.
(d) ASM (http://asm.ow2.org/); http://asm.ow2.org/license.html; Copyright © 2000-2011 INRIA, France Telecom. All rights reserved.
(e) AWS java SDK (http://aws.amazon.com/sdk-for-java/); https://github.com/aws/aws-sdk-java/blob/master/LICENSE.txt; Copyright © 2010-2014 Amazon.com.  All rights reserved.
(f) Base64 (http://iharder.sourceforge.net/current/java/base64/); http://iharder.sourceforge.net/current/java/base64/.
(g) bwa (http://bio-bwa.sourceforge.net/); https://github.com/lh3/bwa/blob/master/COPYING.
(h) charts4j (https://code.google.com/p/charts4j/); http://opensource.org/licenses/mit-license.php.
(i) cofoja (https://github.com/nhatminhle/cofoja); https://github.com/nhatminhle/cofoja/blob/master/COPYING.
(j) Colt (http://acs.lbl.gov/ACSSoftware/colt/); http://acs.lbl.gov/ACSSoftware/colt/license.html; Copyright © 1999 CERN - European Organization for Nuclear Research.  All rights reserved.
(k) dom4j (http://dom4j.sourceforge.net/); http://sourceforge.net/p/dom4j/code/ci/default/tree/LICENSE.txt; Copyright © 2001-2010  MetaStuff, Ltd. All rights reserved.
(l) fastutil (http://fastutil.di.unimi.it/); http://www.apache.org/licenses/LICENSE-2.0.html; Copyright © Sebastiano Vigna. All rights reserved.
(m) Flanagan (http://www.ee.ucl.ac.uk/~mflanaga/java/index.html); https://github.com/smee/flanagan; Copyright © 2014 Michael Thomas Flanagan. All rights reserved.
(n) freemarker (http://freemarker.org/); http://freemarker.org/docs/app_license.html; Copyright © 2014 Attila Szegedi, Daniel Dekany, Jonathan Revusky. All rights reserved.
(o) gson (https://code.google.com/p/google-gson/); http://www.apache.org/licenses/LICENSE-2.0; Copyright © 2008-2014 Google, Inc. All rights reserved.
(p) Guava (https://github.com/google/guava); https://github.com/google/guava/blob/master/COPYING; Copyright © 2009-2014 Google, Inc. All rights reserved.
(q) htsjdk (https://github.com/samtools/htsjdk);  https://github.com/samtools/htsjdk/blob/master/src/java/htsjdk/samtools/AbstractBAMFileIndex.java; Copyright © 2009 The Broad Institute. All rights reserved.
(r) Jama (http://math.nist.gov/javanumerics/jama/); http://math.nist.gov/javanumerics/jama/; Copyright © 2012 The MathWorks and the National Institute of Standards and Technology. All rights reserved.
(s) Java-xmlbuilder (https://github.com/jmurty/java-xmlbuilder); https://github.com/jmurty/java-xmlbuilder/blob/master/LICENSE-2.0.txt. Copyright © 2008-2014 James Murty. All rights reserved.
(t) Javassist (http://www.csg.ci.i.u-tokyo.ac.jp/~chiba/javassist/); https://github.com/jboss-javassist/javassist/blob/3.18/License.html; Copyright ©1999 Shigeru Chiba. All rights reserved.
(u) JetS3t (http://www.jets3t.org/); http://www.apache.org/licenses/LICENSE-2.0; Copyright © 2006-2014 James Murty. All rights reserved.
(v) JGraphT (http://jgrapht.org/); http://jgrapht.org/LGPL.html; Copyright © 2003-2011 Barak Naveh. All rights reserved.
(w) JNA (https://github.com/twall/jna); https://github.com/twall/jna/blob/master/LICENSE.
(x) Junit (http://junit.org/); http://opensource.org/licenses/eclipse-1.0.html. 
(y) Log4j (http://logging.apache.org/log4j/2.x/); http://logging.apache.org/log4j/2.x/license.html; Copyright © 1999-2014 The Apache Software Foundation.  All rights reserved.
(z) Open Grid Scheduler (http://gridscheduler.sourceforge.net/); http://gridscheduler.sourceforge.net/Gridengine_SISSL_license.html.
(aa) Picard (http://broadinstitute.github.io/picard/); https://github.com/broadinstitute/picard/blob/master/src/java/picard/PicardException.java; Copyright © 2009 The Broad Institute.
(bb) reflections (https://code.google.com/p/reflections/); https://github.com/ronmamo/reflections/blob/master/COPYING.txt; Copyright © 2004 Sam Hocevar. All rights reserved.
(cc) remote-drmaa-common (https://code.google.com/p/remote-drmaa-common/); http://www.gnu.org/licenses/lgpl.html; Copyright © 2006-20014 MvnRepository. All rights reserved.
(dd) SAX (http://www.saxproject.org/); http://www.saxproject.org/copying.html.
(ee) Scala (http://www.scala-lang.org/); http://www.scala-lang.org/license.html; Copyright © 2002-2015 EPFL and Copyright © 2011-2015 Typesafe, Inc. All rights reserved.
(ff) Simple (http://simple.sourceforge.net/); https://github.com/ngallagher/simpleframework.
(gg) SLF4J (http://www.slf4j.org/); http://www.slf4j.org/license.html; Copyright © 2004-2013 QOS.ch. All rights reserved.
(hh) Snappy-java (https://github.com/xerial/snappy-java); https://github.com/xerial/snappy-java/blob/develop/LICENSE; Copyright © 2014 Taro L. Saito. All rights reserved.
(ii) SnpEff (http://snpeff.sourceforge.net/); http://snpeff.sourceforge.net/SnpEff.html#license; 
Copyright © 2015 Pablo Cingolani. All rights reserved.
(jj) TestNG (http://testng.org/doc/index.html); http://testng.org/license/; Copyright © 2004 Cédric Beust. All rights reserved.
(kk) TROVE (http://trove.starlight-systems.com/); http://trove.starlight-systems.com/license.  Copyright © 1999 CERN - European Organization for Nuclear Research.  All rights reserved.
