bin/evidence_modeler.pl
etc/conda/activate.d/evidencemodeler-1.1.1.sh
etc/conda/deactivate.d/evidencemodeler-1.1.1.sh
opt/evidencemodeler-1.1.1/EvmUtils/BPbtab.pl
opt/evidencemodeler-1.1.1/EvmUtils/EVMLite.pl
opt/evidencemodeler-1.1.1/EvmUtils/EVM_to_GFF3.pl
opt/evidencemodeler-1.1.1/EvmUtils/convert_EVM_outputs_to_GFF3.pl
opt/evidencemodeler-1.1.1/EvmUtils/create_weights_file.pl
opt/evidencemodeler-1.1.1/EvmUtils/execute_EVM_commands.pl
opt/evidencemodeler-1.1.1/EvmUtils/extract_complete_proteins.pl
opt/evidencemodeler-1.1.1/EvmUtils/gff3_file_to_proteins.pl
opt/evidencemodeler-1.1.1/EvmUtils/gff3_gene_prediction_file_validator.pl
opt/evidencemodeler-1.1.1/EvmUtils/gff_range_retriever.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/AAT_btab_to_gff3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/Exonerate_to_evm_gff3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/GFF2_toolkit/fasta_to_scaffold_gff2.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/GFF2_toolkit/genewise_gff2_alignment_to_geneprediction.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/GFF2_toolkit/gff2_to_gff3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/GFF2_toolkit/gff3_alignments_to_gff2.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/GFF2_toolkit/gff3_genes_to_gff2.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/GeneID_to_gff3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/GxF_to_stats.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/SNAP_to_GFF3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/alignments_gff3_to_introns.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/augustus_GFF3_to_EVM_GFF3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/augustus_GTF_to_EVM_GFF3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/augustus_merge_stop_codons_to_GFF3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/cufflinks_gtf_to_alignment_gff3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/example_data_files/AUGUSTUS-1-NOHINTS.gff
opt/evidencemodeler-1.1.1/EvmUtils/misc/example_data_files/Augustus.gtf
opt/evidencemodeler-1.1.1/EvmUtils/misc/example_data_files/GeneID.gff
opt/evidencemodeler-1.1.1/EvmUtils/misc/example_data_files/SNAP.gff
opt/evidencemodeler-1.1.1/EvmUtils/misc/example_data_files/augustus_output.gff
opt/evidencemodeler-1.1.1/EvmUtils/misc/example_data_files/cufflinks.txt
opt/evidencemodeler-1.1.1/EvmUtils/misc/example_data_files/exonerate.output
opt/evidencemodeler-1.1.1/EvmUtils/misc/example_data_files/fgenesh_output.gff
opt/evidencemodeler-1.1.1/EvmUtils/misc/example_data_files/genemarkHMM_example.txt
opt/evidencemodeler-1.1.1/EvmUtils/misc/exclude_asmbl_subset_from_gff.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/exonerate_gff_to_alignment_gff3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/exons_described_to_token_fmt.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/extract_asmbl_subset_from_gff.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/fgenesh_to_GFF3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/genemarkHMM_to_GFF3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/glimmerHMM_to_GFF3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/introns_described_to_token_fmt.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/jigsaw_gff_to_gff3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/maker_gff_sep_features_by_type.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/maker_match_gff_to_gene_gff3.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/nested_gene_gff3_search.pl
opt/evidencemodeler-1.1.1/EvmUtils/misc/prepare_Jigsaw_formats.pl
opt/evidencemodeler-1.1.1/EvmUtils/partition_EVM_inputs.pl
opt/evidencemodeler-1.1.1/EvmUtils/recombine_EVM_partial_outputs.pl
opt/evidencemodeler-1.1.1/EvmUtils/summarize_btab_tophits.pl
opt/evidencemodeler-1.1.1/EvmUtils/write_EVM_commands.pl
opt/evidencemodeler-1.1.1/PerlLib/Accuracy_Eval.pm
opt/evidencemodeler-1.1.1/PerlLib/BHStats.pm
opt/evidencemodeler-1.1.1/PerlLib/CdbTools.pm
opt/evidencemodeler-1.1.1/PerlLib/EVM_output_parser.pm
opt/evidencemodeler-1.1.1/PerlLib/Fasta_reader.pm
opt/evidencemodeler-1.1.1/PerlLib/GFF3_to_geneobjs.pm
opt/evidencemodeler-1.1.1/PerlLib/GFF3_utils.pm
opt/evidencemodeler-1.1.1/PerlLib/GFF_maker.pm
opt/evidencemodeler-1.1.1/PerlLib/GTF_to_geneobjs.pm
opt/evidencemodeler-1.1.1/PerlLib/GTF_utils.pm
opt/evidencemodeler-1.1.1/PerlLib/Gene_obj.pm
opt/evidencemodeler-1.1.1/PerlLib/Gene_obj_comparator.pm
opt/evidencemodeler-1.1.1/PerlLib/Gene_obj_indexer.pm
opt/evidencemodeler-1.1.1/PerlLib/Gene_ontology.pm
opt/evidencemodeler-1.1.1/PerlLib/Gene_validator.pm
opt/evidencemodeler-1.1.1/PerlLib/Longest_orf.pm
opt/evidencemodeler-1.1.1/PerlLib/Nuc_translator.pm
opt/evidencemodeler-1.1.1/PerlLib/Overlap_piler.pm
opt/evidencemodeler-1.1.1/PerlLib/SnSp/SnSp_analysis.pm
opt/evidencemodeler-1.1.1/PerlLib/SnSp/SnSp_analysis_entry.pm
opt/evidencemodeler-1.1.1/PerlLib/SnSp/SnSp_analysis_manager.pm
opt/evidencemodeler-1.1.1/PerlLib/SnSp/TFPN.pm
opt/evidencemodeler-1.1.1/PerlLib/TiedHash.pm
opt/evidencemodeler-1.1.1/evidence_modeler.pl
opt/evidencemodeler-1.1.1/simple_example/evm.out.gff3.orig
opt/evidencemodeler-1.1.1/simple_example/evm.out.orig
opt/evidencemodeler-1.1.1/simple_example/gene_predictions.gff3
opt/evidencemodeler-1.1.1/simple_example/genome.fasta
opt/evidencemodeler-1.1.1/simple_example/protein_alignments.gff3
opt/evidencemodeler-1.1.1/simple_example/runMe.sh
opt/evidencemodeler-1.1.1/simple_example/transcript_alignments.gff3
opt/evidencemodeler-1.1.1/simple_example/weights.txt
