# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Mar 24 22:16:13 2021
# ------------------------------------------------

package:
  name: ensembl-vep
  version: '103.1'
source:
  sha256: 3512a2c3514f7c10b0348b45bf9fe621dc691100e43f14bec48842b1e11bbf8b
  url: https://github.com/Ensembl/ensembl-vep/archive/release/103.1.tar.gz
build:
  noarch: generic
  number: '1'
  string: pl5262h4a94de4_1
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - c-ares 1.17.1 h7f98852_1
    - ca-certificates 2020.12.5 ha878542_0
    - curl 7.75.0 h979ede3_0
    - krb5 1.17.2 h926e7f8_0
    - libcurl 7.75.0 hc4aaa36_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libgcc-ng 9.3.0 h2828fa1_18
    - libgomp 9.3.0 h2828fa1_18
    - libnghttp2 1.43.0 h812cca2_0
    - libssh2 1.9.0 ha56f1ee_6
    - libstdcxx-ng 9.3.0 h6de172a_18
    - ncurses 6.2 h58526e2_4
    - openssl 1.1.1j h7f98852_0
    - perl 5.26.2 h36c2ea0_1008
    - perl-app-cpanminus 1.7044 pl526_1
    - perl-archive-zip 1.64 pl526_0
    - perl-carp 1.38 pl526_3
    - perl-compress-raw-zlib 2.087 pl526hc9558a2_0
    - perl-constant 1.33 pl526_1
    - perl-dbi 1.642 pl526_0
    - perl-encode 2.88 pl526_1
    - perl-encode-locale 1.05 pl526_6
    - perl-exporter 5.72 pl526_1
    - perl-extutils-makemaker 7.36 pl526_1
    - perl-file-path 2.16 pl526_0
    - perl-file-temp 0.2304 pl526_2
    - perl-lwp-simple 6.15 pl526h470a237_4
    - perl-parent 0.236 pl526_1
    - perl-time-local 1.28 pl526_1
    - tk 8.6.10 h21135ba_1
    - unzip 6.0 h7f98852_2
    - zlib 1.2.11 h516909a_1010
  run:
    - htslib
    - perl >=5.26.2,<5.26.3.0a0
    - perl-bio-db-hts >=2.11
    - perl-bioperl >=1.7.2
    - perl-dbd-mysql
    - perl-dbi
    - perl-io-compress
    - perl-json
    - perl-perlio-gzip
    - perl-sereal
    - perl-set-intervaltree
    - perl-text-csv
    - unzip
test:
  commands:
    - vep --help
    - vep_convert_cache --help
    - vep_install --help
    - haplo --help
    - variant_recoder --help
about:
  description: The VEP determines the effect of your variants (SNPs, insertions, deletions,
    CNVs or structural variants) on genes, transcripts, and protein sequence, as well
    as regulatory regions.
  home: http://www.ensembl.org/info/docs/tools/vep/index.html
  license: Apache-2.0
  summary: Ensembl Variant Effect Predictor
extra:
  container:
    extended-base: true
  copy_test_source_files: true
  final: true
  notes: "This package installs only the variant effect predictor (VEP) library\n\
    code. To install data libraries, you can use the 'vep_install' command\ninstalled\
    \ along with it. For example, to install the VEP library for human\nGRCh38 to\
    \ a directory\n\nvep_install -a cf -s homo_sapiens -y GRCh38 -c /output/path/to/GRCh38/vep\
    \ --CONVERT\n\n(note that vep_install is renamed from INSTALL.pl\n to avoid having\
    \ generic script names in the PATH)\n\nThe --CONVERT flag is not required but\
    \ improves lookup speeds during\nruns. See the VEP documentation for more details\n\
    \nhttp://www.ensembl.org/info/docs/tools/vep/script/vep_cache.html\n"
