# Step-by-step visually instructions  
## Quick start using the test data
```
$ cd CRAQ/Example  && bash run_example.sh
```                           
 ###After running CRAQ you will get the following results under the Output dictionary ####    

![image](https://github.com/JiaoLaboratory/CRAQ/assets/65637958/9167e82d-7e6e-479c-b007-dde60a91ac10)
           
![image](https://github.com/JiaoLaboratory/CRAQ/assets/65637958/9406574c-762f-42af-a52e-0f7e5b61db60)



## How to inspect CRAQ output in IGV? 
###download Integrative Genomics Viewer (IGV) from here: https://software.broadinstitute.org/software/igv/download ###   
![image](https://github.com/JiaoLaboratory/CRAQ/assets/65637958/89bfca08-7d5d-4d2a-9153-31980d6b105f)  
![image](https://github.com/JiaoLaboratory/CRAQ/assets/65637958/33488400-440f-4641-9da2-96b107eeb749)






