INSTALL.rst
LICENSE
MANIFEST.in
README.rst
setup.cfg
setup.py
cobra/__init__.py
cobra/exceptions.py
cobra.egg-info/PKG-INFO
cobra.egg-info/SOURCES.txt
cobra.egg-info/dependency_links.txt
cobra.egg-info/requires.txt
cobra.egg-info/top_level.txt
cobra/core/__init__.py
cobra/core/configuration.py
cobra/core/dictlist.py
cobra/core/formula.py
cobra/core/gene.py
cobra/core/group.py
cobra/core/metabolite.py
cobra/core/model.py
cobra/core/object.py
cobra/core/reaction.py
cobra/core/singleton.py
cobra/core/solution.py
cobra/core/species.py
cobra/core/summary/__init__.py
cobra/core/summary/metabolite_summary.py
cobra/core/summary/model_summary.py
cobra/core/summary/reaction_summary.py
cobra/core/summary/summary.py
cobra/flux_analysis/__init__.py
cobra/flux_analysis/deletion.py
cobra/flux_analysis/fastcc.py
cobra/flux_analysis/gapfilling.py
cobra/flux_analysis/geometric.py
cobra/flux_analysis/helpers.py
cobra/flux_analysis/loopless.py
cobra/flux_analysis/moma.py
cobra/flux_analysis/parsimonious.py
cobra/flux_analysis/phenotype_phase_plane.py
cobra/flux_analysis/reaction.py
cobra/flux_analysis/room.py
cobra/flux_analysis/variability.py
cobra/io/__init__.py
cobra/io/dict.py
cobra/io/json.py
cobra/io/mat.py
cobra/io/sbml.py
cobra/io/yaml.py
cobra/manipulation/__init__.py
cobra/manipulation/annotate.py
cobra/manipulation/delete.py
cobra/manipulation/modify.py
cobra/manipulation/validate.py
cobra/medium/__init__.py
cobra/medium/annotations.py
cobra/medium/boundary_types.py
cobra/medium/minimal_medium.py
cobra/sampling/__init__.py
cobra/sampling/achr.py
cobra/sampling/hr_sampler.py
cobra/sampling/optgp.py
cobra/sampling/sampling.py
cobra/test/__init__.py
cobra/test/conftest.py
cobra/test/test_manipulation.py
cobra/test/test_medium.py
cobra/test/data/annotation.xml
cobra/test/data/e_coli_core.xml
cobra/test/data/fbc_ex1.xml
cobra/test/data/fbc_ex2.xml
cobra/test/data/iJO1366.pickle
cobra/test/data/iJO1366.xml.gz
cobra/test/data/invalid0.xml
cobra/test/data/invalid1.xml
cobra/test/data/invalid2.xml
cobra/test/data/mini.json
cobra/test/data/mini.mat
cobra/test/data/mini.pickle
cobra/test/data/mini.yml
cobra/test/data/mini_cobra.xml
cobra/test/data/mini_fbc1.xml
cobra/test/data/mini_fbc2.xml
cobra/test/data/mini_fbc2.xml.bz2
cobra/test/data/mini_fbc2.xml.gz
cobra/test/data/raven.mat
cobra/test/data/raven.pickle
cobra/test/data/salmonella.genes
cobra/test/data/salmonella.media
cobra/test/data/salmonella.pickle
cobra/test/data/salmonella.xml
cobra/test/data/textbook.xml.gz
cobra/test/data/textbook_fva.json
cobra/test/data/textbook_pfba_fva.json
cobra/test/data/textbook_solution.pickle
cobra/test/data/update_pickles.py
cobra/test/data/validation.xml
cobra/test/test_core/__init__.py
cobra/test/test_core/conftest.py
cobra/test/test_core/test_configuration.py
cobra/test/test_core/test_core_reaction.py
cobra/test/test_core/test_dictlist.py
cobra/test/test_core/test_gene.py
cobra/test/test_core/test_group.py
cobra/test/test_core/test_metabolite.py
cobra/test/test_core/test_model.py
cobra/test/test_core/test_solution.py
cobra/test/test_core/test_summary/__init__.py
cobra/test/test_core/test_summary/test_metabolite_summary.py
cobra/test/test_core/test_summary/test_model_summary.py
cobra/test/test_core/test_summary/test_reaction_summary.py
cobra/test/test_io/__init__.py
cobra/test/test_io/conftest.py
cobra/test/test_io/test_annotation.py
cobra/test/test_io/test_io_order.py
cobra/test/test_io/test_json.py
cobra/test/test_io/test_mat.py
cobra/test/test_io/test_pickle.py
cobra/test/test_io/test_sbml.py
cobra/test/test_io/test_yaml.py
cobra/util/__init__.py
cobra/util/array.py
cobra/util/context.py
cobra/util/solver.py
cobra/util/util.py