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About these jars
Updated 7 Jun 2017
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will run on Java 1.6 and above. If you are getting error messages, try updating your Java installation.

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Cluster Picker jars
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ClusterPicker_1.2.5.jar		built on 07/06/2017 15:08 by Emma Hodcroft
* Command line operation only:	e.g. java -jar ClusterPicker_1.2.5.jar
* single line operation:	e.g. java -jar ClusterPicker_1.2.5.jar sequencesFileName.fas treeFileName.nwk 0.9 0.9 0.045 10

+ option to change the way genetic distance is calculated included: choices = gap (default), valid, abs, ambiguity
+ single line operation:	e.g. java -jar ClusterPicker_1.2.5.jar sequencesFileName.fas treeFileName.nwk 0.9 0.9 0.045 10 gap



ClusterPickerGUI_1.2.5.jar	built on 07/06/2017 15:08 by Emma Hodcroft
* Cluster Picker GUI application
- option to change the way genetic distance is calculated is NOT included; default setting = gap (unchanged from earlier versions)


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Cluster Matcher jar
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ClustMatch1.2.7.jar		built on 23/02/2016 16:14 by Emma Hodcroft   - fixed annotation processing bug, csv output bug
* Cluster Matcher GUI application

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