# GemArgs - Cannoli_2.11: Core 0.8.0 API - org.bdgenomics.cannoli.GemArgs
GemArgs - Cannoli 2.11 Core 0.8.0 API - org.bdgenomics.cannoli.GemArgs
Keywords: GemArgs Cannoli 2.11 Core 0.8.0 API org.bdgenomics.cannoli.GemArgs

org.bdgenomics.cannoli

# GemArgs

###
Related Doc: package cannoli

#### class GemArgs extends Args4jBase

GEM-Mapper function arguments.

Linear Supertypes
Args4jBase, AnyRef, Any
Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. GemArgs
2. Args4jBase
3. AnyRef
4. Any

1. Hide All
2. Show All

Visibility

1. Public
2. All

### Instance Constructors

1. #### new GemArgs()

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### var addFiles: Boolean

5. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

6. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

7. #### var doPrintUsage: Boolean

   Definition Classes
     Args4jBase

8. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

9. #### def equals(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

10. #### var executable: String

11. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

12. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

13. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

14. #### var image: String

15. #### var indexPath: String

16. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

17. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

18. #### final def notify(): Unit

    Definition Classes
      AnyRef

19. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

20. #### var printMetrics: Boolean

    Definition Classes
      Args4jBase

21. #### var sudo: Boolean

22. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

23. #### def toString(): String

    Definition Classes
      AnyRef → Any

24. #### var useDocker: Boolean

25. #### var useSingularity: Boolean

26. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

27. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

28. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from Args4jBase

### Inherited from AnyRef

### Inherited from Any

### Ungrouped