# CannoliFn - Cannoli_2.11: Core 0.8.0 API - org.bdgenomics.cannoli.CannoliFn
CannoliFn - Cannoli 2.11 Core 0.8.0 API - org.bdgenomics.cannoli.CannoliFn
Keywords: CannoliFn Cannoli 2.11 Core 0.8.0 API org.bdgenomics.cannoli.CannoliFn

org.bdgenomics.cannoli

# CannoliFn

###
Related Doc: package cannoli

#### abstract class CannoliFn[X, Y] extends (X) ⇒ Y with Logging

Cannoli function.

X

  Cannoli function argument type parameter.

Y

  Cannoli function result type parameter.

Linear Supertypes
Logging, (X) ⇒ Y, AnyRef, Any
Known Subclasses
BcftoolsCall, BcftoolsMpileup, BcftoolsNorm, BedtoolsIntersect, Blastn, Bowtie, Bowtie2, Bwa, Freebayes, Gem, MagicBlast, Minimap2, SamtoolsMpileup, SingleEndBowtie2, SingleEndStar, SnpEff, Star, Vep, VtNormalize
Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. CannoliFn
2. Logging
3. Function1
4. AnyRef
5. Any

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Visibility

1. Public
2. All

### Instance Constructors

1. #### new CannoliFn(sc: SparkContext)

   sc

     Spark context.

### Abstract Value Members

1. #### abstract def apply(v1: X): Y

   Definition Classes
     Function1

### Concrete Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### def absolute(pathName: String): String

5. #### def andThen[A](g: (Y) ⇒ A): (X) ⇒ A

   Definition Classes
     Function1
   Annotations
     @unspecialized()

6. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

7. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

8. #### def compose[A](g: (A) ⇒ X): (A) ⇒ Y

   Definition Classes
     Function1
   Annotations
     @unspecialized()

9. #### def debug(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

   Attributes
     protected
   Definition Classes
     Logging

10. #### def debug(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

11. #### def debug(msg: ⇒ Any): Unit

    Attributes
      protected
    Definition Classes
      Logging

12. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

13. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

14. #### def error(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

15. #### def error(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

16. #### def error(msg: ⇒ Any): Unit

    Attributes
      protected
    Definition Classes
      Logging

17. #### def files(pathName: String, filter: PathFilter): Seq[String]

18. #### def files(pathName: String): Seq[String]

19. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

20. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

21. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

22. #### def info(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

23. #### def info(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

24. #### def info(msg: ⇒ Any): Unit

    Attributes
      protected
    Definition Classes
      Logging

25. #### def isDebugEnabled: Boolean

    Attributes
      protected
    Definition Classes
      Logging

26. #### def isErrorEnabled: Boolean

    Attributes
      protected
    Definition Classes
      Logging

27. #### def isInfoEnabled: Boolean

    Attributes
      protected
    Definition Classes
      Logging

28. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

29. #### def isTraceEnabled: Boolean

    Attributes
      protected
    Definition Classes
      Logging

30. #### def isWarnEnabled: Boolean

    Attributes
      protected
    Definition Classes
      Logging

31. #### def logger: Logger

    Attributes
      protected
    Definition Classes
      Logging

32. #### def loggerName: String

    Attributes
      protected
    Definition Classes
      Logging

33. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

34. #### final def notify(): Unit

    Definition Classes
      AnyRef

35. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

36. #### def root(pathName: String): String

37. #### val sc: SparkContext

    Spark context.

38. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

39. #### def toString(): String

    Definition Classes
      Function1 → AnyRef → Any

40. #### def trace(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

41. #### def trace(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

42. #### def trace(msg: ⇒ Any): Unit

    Attributes
      protected
    Definition Classes
      Logging

43. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

44. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

45. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

46. #### def warn(mkr: Marker, msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

47. #### def warn(msg: ⇒ Any, t: ⇒ Throwable): Unit

    Attributes
      protected
    Definition Classes
      Logging

48. #### def warn(msg: ⇒ Any): Unit

    Attributes
      protected
    Definition Classes
      Logging

### Inherited from Logging

### Inherited from (X) ⇒ Y

### Inherited from AnyRef

### Inherited from Any

### Ungrouped