# Cannoli_2.11: Core 0.8.0 API
Cannoli 2.11 Core 0.8.0 API
Keywords: Cannoli 2.11 Core 0.8.0 API

SamtoolsMpileup
cannoli
SamtoolsMpileupArgs
cannoli
SingleEndBowtie2
cannoli
SingleEndBowtie2Args
cannoli
SingleEndStar
cannoli
SingleEndStarArgs
cannoli
SingularityBuilder
builder
SnpEff
cannoli
SnpEffArgs
cannoli
Star
cannoli
StarArgs
cannoli
sample
BwaArgs
sc
CannoliFn
score
MagicBlastArgs
seed
Minimap2Args SingleEndStarArgs StarArgs
setExecutable
CommandBuilder
setFlankSize
CommandBuilder
setImage
CommandBuilder
setSudo
CommandBuilder
setTimeout
CommandBuilder
sorted
BedtoolsIntersectArgs
species
VepArgs
starArgs
SingleEndStarArgs StarArgs
stringency
BcftoolsCall BcftoolsMpileup BcftoolsNorm BlastnArgs Freebayes MagicBlastArgs SamtoolsMpileup SnpEff Vep VtNormalize
sudo
BcftoolsCallArgs BcftoolsMpileupArgs BcftoolsNormArgs BedtoolsIntersectArgs BlastnArgs Bowtie2Args BowtieArgs BwaArgs FreebayesArgs GemArgs MagicBlastArgs Minimap2Args SamtoolsMpileupArgs SingleEndBowtie2Args SingleEndStarArgs SnpEffArgs StarArgs VepArgs VtNormalizeArgs