# CannoliReadDataset - Cannoli_2.11: Core 0.8.0 API - org.bdgenomics.cannoli.Cannoli.CannoliReadDataset
CannoliReadDataset - Cannoli 2.11 Core 0.8.0 API - org.bdgenomics.cannoli.Cannoli.CannoliReadDataset
Keywords: CannoliReadDataset Cannoli 2.11 Core 0.8.0 API org.bdgenomics.cannoli.Cannoli.CannoliReadDataset

org.bdgenomics.cannoli.Cannoli

# CannoliReadDataset

###
Related Doc: package Cannoli

#### implicit class CannoliReadDataset extends AnyRef

Linear Supertypes
AnyRef, Any
Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. CannoliReadDataset
2. AnyRef
3. Any

1. Hide All
2. Show All

Visibility

1. Public
2. All

### Instance Constructors

1. #### new CannoliReadDataset(reads: ReadDataset)

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### def alignWithBowtie2(args: SingleEndBowtie2Args): AlignmentDataset

   Align the unaligned single-end reads in this ReadDataset with Bowtie 2 via Cannoli.

   Align the unaligned single-end reads in this ReadDataset with Bowtie 2 via Cannoli.

   args

     Bowtie 2 function arguments.

   returns

     AlignmentDataset.

5. #### def alignWithStar(args: SingleEndStarArgs): AlignmentDataset

   Align the unaligned single-end reads in this ReadDataset with STAR-Mapper via Cannoli.

   Align the unaligned single-end reads in this ReadDataset with STAR-Mapper via Cannoli.

   args

     STAR-Mapper function arguments.

   returns

     AlignmentDataset.

6. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

7. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

8. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

9. #### def equals(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

10. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

11. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

12. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

13. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

14. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

15. #### final def notify(): Unit

    Definition Classes
      AnyRef

16. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

17. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

18. #### def toString(): String

    Definition Classes
      AnyRef → Any

19. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

20. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

21. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from AnyRef

### Inherited from Any

### Ungrouped