# BlastnArgs - Cannoli_2.11: Core 0.8.0 API - org.bdgenomics.cannoli.BlastnArgs
BlastnArgs - Cannoli 2.11 Core 0.8.0 API - org.bdgenomics.cannoli.BlastnArgs
Keywords: BlastnArgs Cannoli 2.11 Core 0.8.0 API org.bdgenomics.cannoli.BlastnArgs

org.bdgenomics.cannoli

# BlastnArgs

###
Related Doc: package cannoli

#### class BlastnArgs extends Args4jBase

Blastn function arguments.

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Args4jBase, AnyRef, Any
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1. BlastnArgs
2. Args4jBase
3. AnyRef
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### Instance Constructors

1. #### new BlastnArgs()

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### var addFiles: Boolean

5. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

6. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

7. #### var db: String

8. #### var doPrintUsage: Boolean

   Definition Classes
     Args4jBase

9. #### final def eq(arg0: AnyRef): Boolean

   Definition Classes
     AnyRef

10. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

11. #### var evalue: Double

12. #### var executable: String

13. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

14. #### var gapExtend: Integer

15. #### var gapOpen: Integer

16. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

17. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

18. #### var image: String

19. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

20. #### var maxHsps: Integer

21. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

22. #### final def notify(): Unit

    Definition Classes
      AnyRef

23. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

24. #### var penalty: Integer

25. #### var percentIdentity: Double

26. #### var printMetrics: Boolean

    Definition Classes
      Args4jBase

27. #### var reward: Integer

28. #### var stringency: String

29. #### var sudo: Boolean

30. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

31. #### def toString(): String

    Definition Classes
      AnyRef → Any

32. #### var useDocker: Boolean

33. #### var useSingularity: Boolean

34. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

35. #### final def wait(arg0: Long, arg1: Int): Unit

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      @throws( ... )

36. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
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      @throws( ... )

37. #### var wordSize: Integer

### Inherited from Args4jBase

### Inherited from AnyRef

### Inherited from Any

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