# StarArgs - Cannoli_2.11: CLI 0.8.0 API - org.bdgenomics.cannoli.cli.StarArgs
StarArgs - Cannoli 2.11 CLI 0.8.0 API - org.bdgenomics.cannoli.cli.StarArgs
Keywords: StarArgs Cannoli 2.11 CLI 0.8.0 API org.bdgenomics.cannoli.cli.StarArgs

org.bdgenomics.cannoli.cli

# StarArgs

###
Related Doc: package cli

#### class StarArgs extends cannoli.StarArgs with ADAMSaveAnyArgs with ParquetArgs

STAR-Mapper command line arguments.

Linear Supertypes
ParquetArgs, ADAMSaveAnyArgs, SaveArgs, ParquetRDDArgs, cannoli.StarArgs, Args4jBase, AnyRef, Any
Ordering

1. Alphabetic
2. By Inheritance

Inherited

1. StarArgs
2. ParquetArgs
3. ADAMSaveAnyArgs
4. SaveArgs
5. ParquetRDDArgs
6. StarArgs
7. Args4jBase
8. AnyRef
9. Any

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Visibility

1. Public
2. All

### Instance Constructors

1. #### new StarArgs()

### Value Members

1. #### final def !=(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

2. #### final def ##(): Int

   Definition Classes
     AnyRef → Any

3. #### final def ==(arg0: Any): Boolean

   Definition Classes
     AnyRef → Any

4. #### var addFiles: Boolean

   Definition Classes
     StarArgs

5. #### final def asInstanceOf[T0]: T0

   Definition Classes
     Any

6. #### var asSingleFile: Boolean

   Definition Classes
     StarArgs → ADAMSaveAnyArgs

7. #### var blockSize: Int

   Definition Classes
     ParquetArgs → ParquetRDDArgs

8. #### def clone(): AnyRef

   Attributes
     protected[java.lang]
   Definition Classes
     AnyRef
   Annotations
     @throws( ... )

9. #### var compressionCodec: CompressionCodecName

   Definition Classes
     ParquetArgs → ParquetRDDArgs

10. #### var deferMerging: Boolean

    Definition Classes
      StarArgs → ADAMSaveAnyArgs

11. #### var disableDictionaryEncoding: Boolean

    Definition Classes
      ParquetArgs → ParquetRDDArgs

12. #### var disableFastConcat: Boolean

    Definition Classes
      StarArgs → ADAMSaveAnyArgs

13. #### var doPrintUsage: Boolean

    Definition Classes
      Args4jBase

14. #### final def eq(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

15. #### def equals(arg0: Any): Boolean

    Definition Classes
      AnyRef → Any

16. #### var executable: String

    Definition Classes
      StarArgs

17. #### def finalize(): Unit

    Attributes
      protected[java.lang]
    Definition Classes
      AnyRef
    Annotations
      @throws( classOf[java.lang.Throwable] )

18. #### var genomePath: String

    Definition Classes
      StarArgs

19. #### final def getClass(): Class[_]

    Definition Classes
      AnyRef → Any

20. #### def hashCode(): Int

    Definition Classes
      AnyRef → Any

21. #### var image: String

    Definition Classes
      StarArgs

22. #### var inputPath: String

23. #### final def isInstanceOf[T0]: Boolean

    Definition Classes
      Any

24. #### var logLevel: String

    Definition Classes
      ParquetArgs

25. #### final def ne(arg0: AnyRef): Boolean

    Definition Classes
      AnyRef

26. #### final def notify(): Unit

    Definition Classes
      AnyRef

27. #### final def notifyAll(): Unit

    Definition Classes
      AnyRef

28. #### var outputPath: String

    Definition Classes
      StarArgs → SaveArgs

29. #### var pageSize: Int

    Definition Classes
      ParquetArgs → ParquetRDDArgs

30. #### var printMetrics: Boolean

    Definition Classes
      Args4jBase

31. #### var seed: Integer

    Definition Classes
      StarArgs

32. #### var sortFastqOutput: Boolean

    Definition Classes
      StarArgs → ADAMSaveAnyArgs

33. #### var starArgs: String

    Definition Classes
      StarArgs

34. #### var stringency: String

35. #### var sudo: Boolean

    Definition Classes
      StarArgs

36. #### final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
      AnyRef

37. #### def toString(): String

    Definition Classes
      AnyRef → Any

38. #### var useDocker: Boolean

    Definition Classes
      StarArgs

39. #### var useSingularity: Boolean

    Definition Classes
      StarArgs

40. #### final def wait(): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

41. #### final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

42. #### final def wait(arg0: Long): Unit

    Definition Classes
      AnyRef
    Annotations
      @throws( ... )

### Inherited from ParquetArgs

### Inherited from ADAMSaveAnyArgs

### Inherited from SaveArgs

### Inherited from ParquetRDDArgs

### Inherited from cannoli.StarArgs

### Inherited from Args4jBase

### Inherited from AnyRef

### Inherited from Any

### Ungrouped