# Serialized Form

## Package org.bdgenomics.cannoli.builder

### Class org.bdgenomics.cannoli.builder.CommandBuilder extends Object implements Serializable

### Serialized Fields

#### executable

    String executable

Command to run.

#### image

    String image

Name of container image.

#### flankSize

    Integer flankSize

Number of bases to flank each command invocation by.

#### sudo

    boolean sudo

True to run via sudo.

#### timeout

    Long timeout

How long to let a single partition run for, in seconds.

#### arguments

    List<E> arguments

List of command arguments.

#### environment

    Map<K,V> environment

Map of environment variables.

#### files

    List<E> files

List of files to make available locally.

#### mounts

    Map<K,V> mounts

Map of mount points.

### Class org.bdgenomics.cannoli.builder.CommandBuilders extends Object implements Serializable

### Class org.bdgenomics.cannoli.builder.DockerBuilder extends org.bdgenomics.cannoli.builder.ContainerBuilder implements Serializable

### Class org.bdgenomics.cannoli.builder.LocalBuilder extends CommandBuilder implements Serializable

### Class org.bdgenomics.cannoli.builder.SingularityBuilder extends org.bdgenomics.cannoli.builder.ContainerBuilder implements Serializable