# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Nov  4 06:27:33 2019
# ------------------------------------------------

package:
    name: bohra
    version: 1.0.27
source:
    sha256: 249b1d6acc18d356ee95c0505d96857af600004a49e76add5282452ee18e8ed2
    url: https://pypi.io/packages/source/b/bohra/bohra-1.0.27.tar.gz
build:
    entry_points:
        - bohra=bohra.bohra:main
    noarch: python
    number: '0'
    script: 'sed -i.bak ''35d;34d;28d'' setup.py; /opt/conda/conda-bld/bohra_1572849026238/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/bin/python
        -m pip install . --no-deps --ignore-installed -vv '
    string: py_0
requirements:
    host:
        - _libgcc_mutex 0.1 main
        - ca-certificates 2019.9.11 hecc5488_0
        - certifi 2019.9.11 py38_0
        - libffi 3.2.1 he1b5a44_1006
        - libgcc-ng 9.1.0 hdf63c60_0
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1c h516909a_0
        - pip 19.3.1 py38_0
        - python 3.8.0 h357f687_2
        - readline 8.0 hf8c457e_0
        - setuptools 41.6.0 py38_1
        - sqlite 3.30.1 hcee41ef_0
        - tk 8.6.9 hed695b0_1003
        - wheel 0.33.6 py38_0
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h516909a_1006
    run:
        - abricate
        - biopython >=1.70
        - iqtree
        - jinja2
        - kraken2
        - mlst
        - numpy
        - packaging
        - pandas >=0.23.0
        - prokka
        - psutil
        - pytest
        - pytest-runner
        - python >=3.6
        - roary
        - seqtk
        - sh
        - shovill >=1.0.4
        - snakemake >=5.4.0
        - snippy >=4.4.3
        - snp-dists >=0.6.3
        - svgwrite
test:
    commands:
        - bohra --help
    imports:
        - bohra
about:
    home: https://github.com/kristyhoran/bohra
    license: GNU General Public v3 (GPLv3)
    license_family: GPL3
    license_file: LICENSE.txt
    summary: A bioinformatics pipeline for analysing short read Illumina data microbiological
        public health.
extra:
    copy_test_source_files: true
    final: true
    recipe-maintainers:
        - kristyhoran
